The problem I have right now is the only REAXFF solvated protein parameter set with F was actually created for studying protein interaction with Au. I’m starting to suspect that the parameters for F are nowhere near optimal, small molecules with a sulfonyl fluoride functional group are not behaving at all like i would expect. It looks like the parameter set was optimized solely for Au without much regard to S and F by Monti(2016) Simulation of Gold Functionalization with Cysteine by Reactive Molecular Dynamics.
so im starting with that parameter set C/H/O/N/S/Mg/P/Na/Ti/Cl/F/Au, dropping Au and Ti, and creating some DFT training data with INQ and crosschecking with ADF using the same density functional HYB_GGA_XC_WB97X from libxc to optimize for S / F properties.
my question is: does anyone know of a non-commercial alternative to ParAMS ? we have a license for the Amsterdam Modeling Suite but it’s only available on one cluster which is getting shut down for replacement on dec 7.
i also had a look at van Duin’s website but the pdf manual there is from 2002.
ill have a few more questions shortly …