Dear lammps users,
When I tried to read a restart file and apply common neighbor analysis (compute cna/atom), it did not work properly, the return value is not showing any dislocation structure but some grid of the system (which i guess is related by parallel part).
Did any one meet this situation before and how should I fix it?
Thanks
The following is my input file and I am running the system in 128 processors.
units metal
dimension 3
boundary p p p
atom_style atomic
neighbor setting
neighbor 2 bin
neigh_modify delay 1
read_restart restart.700000.equil
EAM potentials
pair_style eam
pair_coeff * * /nfs/12/osu5634/software/lammps/lammps2/potentials/Ni_u3.eam
lattice fcc 3.52 orient x 1 0 0 orient y 0 1 0 orient z 0 0 1
compute CNA all cnasurface/atom 3.00 6 8
compute CENTRO all centro/atom fcc
compute PE all pe/atom
compute KE all ke/atom
compute stress all stress/atom pair
compute new all temp/deform
velocity all create 1E-3 887723 temp new
timestep 0.001
thermo 200
thermo_modify temp new
fix 1 all nve