I am working on Nanoidentation MD Modeling of an alloy. My program used to get shut down by itself without any error. Hence, I tried using the read restart command to again restart from the point I left.
After I try reading the file using restart I get the error "Atom sorting has bin size=0.0 (…/atom.cpp:1877)".
I have enclosed the code snippet for reference.
LAMMPS (26 Jan 2017-ICMS)
OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (…/comm.cpp:90)
using 1 OpenMP thread(s) per MPI task
you are using a old and unsupported LAMMPS version. you should update to a more recent LAMMPS version. the specific error you are reporting may be related to a bug that was since fixed.
in addition, you need to more carefully study the restart documentation. not all items in an input are automatically re-created upon a restart. you have to re-issue the same fix commands, computes etc. also, in some cases the pair style needs to be repeated upon restart. you can find a section “Restart info” in the documentation for each command.