ERROR on proc 0: Bond atoms 1 2 missing on proc 0 at step 22410 (src/ntopo_bond_all.cpp:59)

LAMMPS
1

I am currently simulating the oxDNA package in conjunction with a single-walled carbon nanotube (SWCNT). For this preliminary test, I have defined only one point mass to represent the SWCNT. However, I encountered the following error:
ERROR on proc 0: Bond atoms 1 2 missing on proc 0 at step 22410 (src/ntopo_bond_all.cpp:59)

The last command executed was: run ${nstep}.
test.in (3.6 KB)
test3.tri (7.4 KB)
these are my files.

2

This error is quite common on this forum. Did you take a look at the other posts that are reporting the same error? The solutions that are usually proposed to solve the issue are quite generic and will probably apply to your case as well.

3

yes, I was not able to resolve the issue, any help on the matter would be useful. The first 18 atoms are ellipsoids and the 19th is the point mass.

4

What did you try to solve the issue?

5

I tried changing (increasing) the neighbouring list skin distance, changing (decreasing) the timestep, modifying the fix balance command. The issue arises when i add a new point mass to the oxDNA input file, but when run without the swcnt there is no error.