Dear all,
I use the fix/restrain command to restrain the dihedrals.
The command are following:
fix 1 all restrain dihedral 1 8 9 10 2000.0 2000.0 0.0 during npt temp 300 300 iso 1 1
in this case, the average dihedral is -2
However, when the target dihedrals is set 153, the command are following:
fix 1 all restrain dihedral 1 8 9 10 2000.0 2000.0 153.0 during npt temp 300 300 iso 1 1
dihedral value hard to be equilibrium
It should be not that the force field of my system is GAFF2 (dihedral_style fourier),
while the command in fix/restrain, the ‘dihedral’ keyword applies a dihedral restraint to the specified atoms using a simplified form of the function used by the dihedral_style charmm command