Hi;
I want to make a nanopore setup for simulation of polymer translocation through a nanopore. So i need to put a wall with a pore in its center in the middle of a simulation box and i want to use fix srd command for simulation of explicit fluid as a background solvent in the nanopore setup. I attached animation film from my nanopore setup that i simulated. I want to add solvent particles to this setup in order to take into account hydrodynamics interactions between the polymer and the fluid.
Could i use fix srd command for this?
Could srd particles interact with both monomers of a polymer as a big group and particles of wall?
Thank you for your help in advance;
Anora
