How to get PDB file from lammpstrj files

LAMMPS LAMMPS General Discussion
1

Hi All,

I have generated the LAMMPS data file using the CA atom coordinate of the PDB file, run the LAMMPS simulation, and got the lammpstrj file. now, I have the last snapshot of the trajectory file and try to generate the PDB file.
Is it possible to get the PDB file from lammpstrj file?

Best regards,
Santosh

2

You can use the pizza.py toolkit to convert files into suitable formats. Here is the link to the files Pizza.py Toolkit

Best,
PD

1 Like
3

Thankyou Prathamesh

4

You can also open the PDB file in VMD, and then load the trajectory into the existing representation.

5

Thankyou hothello