Dear lammps users,
I have simulated a protein in lammps. I am using the dcd file as the output to plot the secondary structure in VMD. I got the segmentation error in VMD. I found that Lammps dcd output does not include the name of each segment name of the protein(, and also the name of each molecule which is needed for secondary structure). Is there any alternative? As I have simulated the protein in lammps and now I can not plot the secondary structure.