[lammps-users] Installation of lammps

Hi,

Newbie here… please show mercy…

SHELL = /bin/sh
.SUFFIXES: .cpp .d

CC = g++
CCFLAGS = -o
DEPFLAGS = -D
LINK = g++
LINKFLAGS = -o
LIB = -lstdc++
ARCHIVE = ar
ARFLAGS = -rc
SIZE = size

LMP_INC = -DLAMMPS_GZIP

MPI_INC = -I…/STUBS
MPI_PATH = -L…/STUBS
MPI_LIB = -lmpi
#MPI_INC = -DMPICH_IGNORE_CXX_SEEK
#MPI_PATH =
#MPI_LIB = -lmpich -lpthread

FFT_INC = -DFFT_NONE
FFT_PATH =
FFT_LIB =

Managed to (i think) compile. After i typed gmake linux

gmake[1]: Entering directory `/home/sidiq/SidLAMMPS/lammps-27May10/src/Obj_linux’
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_charmm.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_cosine.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_cosine_delta.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_cosine_squared.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_harmonic.cpp
g++ -o -DLAMMPS_GZIP -I…/STUBS -DFFT_NONE -c angle_hybrid.cpp
.
.

but then i got

g++ -o -L…/STUBS angle_charmm.o angle_cosine.o angle_cosine_delta.o angle_cosine_squared.o angle.o angle_harmonic.o angle_hybrid.o angle_table.o atom.o atom_vec_angle.o atom_vec_atomic.o atom_vec_bond.o atom_vec_charge.o atom_vec.o atom_vec_full.o atom_vec_hybrid.o atom_vec_molecular.o bond.o bond_fene.o bond_fene_expand.o bond_harmonic.o bond_hybrid.o bond_morse.o bond_nonlinear.o bond_quartic.o bond_table.o change_box.o comm.o compute_angle_local.o compute_bond_local.o compute_centro_atom.o compute_cna_atom.o compute_com.o compute_com_molecule.o compute_coord_atom.o compute.o compute_dihedral_local.o compute_displace_atom.o compute_erotate_sphere.o compute_group_group.o compute_gyration.o compute_gyration_molecule.o compute_heat_flux.o compute_improper_local.o compute_ke_atom.o compute_ke.o compute_msd.o compute_msd_molecule.o compute_pair_local.o compute_pe_atom.o compute_pe.o compute_pressure.o compute_property_atom.o compute_property_local.o compute_property_molecule.o compute_rdf.o compute_reduce.o compute_reduce_region.o compute_stress_atom.o compute_temp_com.o compute_temp.o compute_temp_deform.o compute_temp_partial.o compute_temp_profile.o compute_temp_ramp.o compute_temp_region.o compute_temp_sphere.o create_atoms.o create_box.o delete_atoms.o delete_bonds.o dihedral_charmm.o dihedral.o dihedral_harmonic.o dihedral_helix.o dihedral_hybrid.o dihedral_multi_harmonic.o dihedral_opls.o displace_atoms.o displace_box.o domain.o dump_atom.o dump_cfg.o dump.o dump_custom.o dump_dcd.o dump_local.o dump_xyz.o error.o ewald.o fft3d.o fft3d_wrap.o finish.o fix_addforce.o fix_ave_atom.o fix_aveforce.o fix_ave_histo.o fix_ave_spatial.o fix_ave_time.o fix_bond_break.o fix_bond_create.o fix_bond_swap.o fix_box_relax.o fix.o fix_deform.o fix_deposit.o fix_drag.o fix_dt_reset.o fix_efield.o fix_enforce2d.o fix_evaporate.o fix_gravity.o fix_heat.o fix_indent.o fix_langevin.o fix_lineforce.o fix_minimize.o fix_momentum.o fix_move.o fix_nh_asphere.o fix_nh.o fix_nh_sphere.o fix_nph.o fix_nph_sphere.o fix_npt.o fix_npt_sphere.o fix_nve.o fix_nve_limit.o fix_nve_noforce.o fix_nve_sphere.o fix_nvt.o fix_nvt_sllod.o fix_nvt_sphere.o fix_orient_fcc.o fix_planeforce.o fix_press_berendsen.o fix_print.o fix_recenter.o fix_respa.o fix_rigid.o fix_rigid_nve.o fix_rigid_nvt.o fix_setforce.o fix_shake.o fix_shear_history.o fix_spring.o fix_spring_rg.o fix_spring_self.o fix_store_coord.o fix_store_force.o fix_temp_berendsen.o fix_temp_rescale.o fix_thermal_conductivity.o fix_tmd.o fix_ttm.o fix_viscosity.o fix_viscous.o fix_wall.o fix_wall_harmonic.o fix_wall_lj126.o fix_wall_lj93.o fix_wall_reflect.o fix_wall_region.o force.o group.o improper.o improper_cvff.o improper_harmonic.o improper_hybrid.o input.o integrate.o kspace.o lammps.o lattice.o library.o main.o memory.o min_cg.o min.o min_hftn.o minimize.o min_linesearch.o min_sd.o modify.o neigh_bond.o neighbor.o neigh_derive.o neigh_full.o neigh_gran.o neigh_half_bin.o neigh_half_multi.o neigh_half_nsq.o neigh_list.o neigh_request.o neigh_respa.o neigh_stencil.o output.o pack.o pair_airebo.o pair_born_coul_long.o pair_buck_coul_cut.o pair_buck_coul_long.o pair_buck.o pair_coul_cut.o pair_coul_debye.o pair_coul_long.o pair.o pair_dpd.o pair_dpd_tstat.o pair_eam_alloy.o pair_eam.o pair_eam_fs.o pair_hybrid.o pair_hybrid_overlay.o pair_lj96_cut.o pair_lj_charmm_coul_charmm.o pair_lj_charmm_coul_charmm_implicit.o pair_lj_charmm_coul_long.o pair_lj_cut_coul_cut.o pair_lj_cut_coul_debye.o pair_lj_cut_coul_long.o pair_lj_cut_coul_long_tip4p.o pair_lj_cut.o pair_lj_expand.o pair_lj_gromacs_coul_gromacs.o pair_lj_gromacs.o pair_lj_smooth.o pair_morse.o pair_soft.o pair_sw.o pair_table.o pair_tersoff.o pair_tersoff_zbl.o pair_yukawa.o pppm.o pppm_tip4p.o random_mars.o random_park.o read_data.o read_restart.o region_block.o region_cone.o region.o region_cylinder.o region_intersect.o region_plane.o region_prism.o region_sphere.o region_union.o remap.o remap_wrap.o replicate.o respa.o run.o set.o shell.o special.o temper.o thermo.o timer.o universe.o update.o variable.o velocity.o verlet.o write_restart.o -lmpi -lstdc++ -o …/lmp_linux
g++: angle_charmm.o: No such file or directory
g++: angle_cosine.o: No such file or directory
g++: angle_cosine_delta.o: No such file or directory
g++: angle_cosine_squared.o: No such file or directory
g++: angle.o: No such file or directory
g++: angle_harmonic.o: No such file or directory
g++: angle_hybrid.o: No such file or directory
.
.

i thought the .o files will exist after compilation…

Hi,

Newbie here.. please show mercy..

SHELL = /bin/sh
.SUFFIXES: .cpp .d

CC = g++
CCFLAGS = -o
DEPFLAGS = -D

LINK = g++
LINKFLAGS = -o

thave

.

i thought the .o files will exist after compilation..

they will, but your compiler settings are all wrong.
there is a big difference between the -o and the -O flag.
check out the gcc/g++ documentation.

edit Makefile.serial and replace g++4 with g++

and then type make serial

cheers,
    axel.