Again, not sure if this is how to reply to a specific message, but this is
in response to the following: Can LAMMPS do this? (??) by jiaoyixiong
I am not POSITIVE, but I remember some work that is SIMILAR. She used
lammps and recorded electric outputs for a DNA device.
Here's some references. Hope they are helpful:
Title: Electrophoresis of ssDNA through nanoelectrode gaps from molecular
dynamics: Impact of gap width and chain length
Author(s): Payne CM, Zhao XC, Cummings PT
Source: JOURNAL OF PHYSICAL CHEMISTRY B Volume: 112 Issue: 40 Pages:
12851-12858 Published: OCT 9 2008
2. Title: Molecular dynamics simulation of ss-DNA translocation between
copper nanoelectrodes incorporating electrode charge dynamics
Author(s): Payne CM, Zhao X, Vlcek L, et al.
Source: JOURNAL OF PHYSICAL CHEMISTRY B Volume: 112 Issue: 6 Pages:
1712-1717 Published: FEB 14 2008
3. Title: Controlled translocation of DNA segments through nanoelectrode
gaps from molecular dynamics
Author(s): Zhao X, Payne CM, Cummings PT
Source: JOURNAL OF PHYSICAL CHEMISTRY C Volume: 112 Issue: 1 Pages:
8-12 Published: JAN 10 2008
4. Title: Single-strand DNA molecule translocation through nanoelectrode
gaps
Author(s): Zhao XC, Payne CM, Cummings PT, et al.
Source: NANOTECHNOLOGY Volume: 18 Issue: 42 Article Number: 424018
Published: OCT 24 2007
5. Title: Molecular simulations of DNA transport in solution
Author(s): Payne CM, Zhao X, Cummings PT
Source: MOLECULAR SIMULATION Volume: 33 Issue: 4-5 Pages: 399-403
Published: APR 15 2007