Hi Steve,
the problem is that you used the restart file produced after only 100 time steps when the bugs with replicate may have not yet occurred.
If I use the restart file after 100,000 steps (attached), the bond error is still there.
-Trung
Quoting Steve Plimpton <[email protected]>:
in.bug.restart (706 Bytes)
tmp.restart.100000 (98.3 KB)