I'm using VMD to visualize LAMMPS dumps of a system of rigid particles. Is there a way to visualize this data set such that all atoms are colored by molecular-ID?
On a semi-related note, i am able to have LAMMPS create .xtc and .dcd dump files, but after opening these files in VMD, the viewer does not show anything. However, each "molecule" i add has the correct number of atoms, however despite going through all the available representations, i cannot get anything to show up (for either dump style).
I'm running on an Macbook Pro, intel-OS X v10.5.1 machine, VMD version 1.8.6 for Mac OS X, and latest version of LAMMPS, built with the XTC package.