Hi,
I am using VMD 1.8.7 to visualize the dump file from lammps by creating a psf file first, but there is no bond but only atoms information.
Okay, the command I ran were simply following the lmp2vmd manual, such as the micelle example provided by lammps:
source lmpbonds2vmd.tcl
mol new dump.micelle type lammpstrjwaitfor all
lmpbondsfromdata 0 data.micelle
animate write psf micelle.psf.
However, the screen log shows that:
Atoms: 1200
Bonds: 0
And the VMD only shows the points of atoms with no bonds as well.
Is there anything I forgot?
Thank you,
-Fei