When I am depositing my atoms using fix deposit command on already heated substrate , the movement of the substrate atoms are getting stopped while depositing.
Kindly suggest methods to get pass through this problem.
Your description of your problem is very succinct. It is impossible to provide meaningful help without basic information:
- What version of LAMMPS are you using?
- What commands are you using and what was your input?
- What was the expected behaviour?
The fix deposit command is not an integrator so it should not have much to do with movement of the atoms.