Dear you:
I have built up lammps on the HPC, and i submit a job. However, when i submit the 2d jod, there appears a problem like this “mpirun noticed that process rank 6 with PID 5098 on node compute-1-15.local exited on signal 9 (Killed)”.
I never come across the problem like this .
How can i do to solve this problem?
This is my inpu file:
#!/bin/sh -f
#PBS -N zhousi-cu2
#PBS -l nodes=8:ppn=8
#PBS -l walltime=40:00:00
#PBS -l mem=5gb
#PBS -q default
#PBS -j oe
#PBS -o zyg.log
nprocs=wc -l < $PBS_NODEFILE
cd $PBS_O_WORKDIR
/opt/openmpi/bin/mpirun -np $nprocs -machinefile $PBS_NODEFILE $PBS_O_WORKDIR/lmp_openmpi < SiC-Cu.in
thanks
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Dear you:
I have built up lammps on the HPC, and i submit a job. However, when i submit the 2d jod, there appears a problem like this “mpirun noticed that process rank 6 with PID 5098 on node compute-1-15.local exited on signal 9 (Killed)”.
I never come across the problem like this .
How can i do to solve this problem?
|
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talk to the people running the cluster. there may be something wrong
with that one node or you may be doing something wrong.
not a lammps issue.
axel.