(no subject)

Hello
iam trying to do the solidification of a high entropy alloy iam getting this error "Lost atoms original 4000 current 3 (…/thermo.cpp:441)
and also it shows a warning that Too many neighbors in CNA for 4000 atoms (…/compute_cna_atom.cpp: 190)
The following is my input script

Input script
clear
units metal
dimension 3
#processors 3 3 2
boundary p p p
atom_style atomic
atom_modify map array

---------- Create Atoms ---------------------

read_data 4000structureoutmat.dat

---------- Define Interatomic Potential ---------------------

pair_style eam/alloy
pair_coeff * * CoFeNiPd.set Co Fe Ni Pd
neighbor 2.0 bin
neigh_modify delay 0 every 1 check yes page 500000 one 50000
timestep 0.002 #from jafray 0.002 picometers
velocity all create 300 12345 mom yes rot yes

---------- calculatingcentro symmetry to know whether the atom is distorted or not---------------------

compute csym all centro/atom fcc
compute peratom all pe/atom
compute pattern all cna/atom 3.414
#reset_timestep 0
thermo 10
thermo_style custom step temp etotal ke pe lx ly lz press pxx pyy pzz enthalpy

---------- Run Minimization ---------------------

dump 3 all custom 50 dump.f* id type xs ys zs vx vy vz fx fy fz c_csym c_peratom c_pattern
fix 3 all npt temp 2300 2300 0.2 iso 0 0 2
run 500000
undump 3
unfix 3
write_data st10homo.dat
write_restart st10homo.rest
dump 4 all custom 10000 dump.f* id type xs ys zs c_csym c_peratom c_pattern
dump_modify 4 element Co Fe Ni Pd
fix 4 all npt temp 2300 300 0.2 iso 0 0 2
run 100000000
undump 4
unfix 4
write_data st10p2300to300.dat
write_restart st10p2300to300.rest
dump 5 all custom 2500000 dump.f* id type xs ys zs c_csym c_peratom c_pattern
dump_modify 5 element Co Fe Ni Pd
fix 5 all npt temp 300 300 0.2 iso 0 0 2
run 2500000
undump 5
unfix 5

The Following is my data file :
LAMMPS Description

4000 atoms
4 atom types

0.0 20 xlo xhi
0.0 20 ylo yhi
0.0 20 zlo zhi

Masses

1 58.93
2 55.89
3 58.69
4 106.42

Atoms

1 1 0 0 0
2 1 0.05 0.05 0
3 3 0.05 0 0.05
4 4 0 0.05 0.05
5 1 0.1 0 0
8 3 0.1 0.05 0.05
41 2 0 0.1 0
43 2 0.05 0.1 0.05
45 3 0.1 0.1 0
401 2 0 0 0.1
402 1 0.05 0.05 0.1
405 4 0.1 0 0.1

why are you making your life needlessly complicated?
you had a solution that was close to working and all you had to do were a few changes to the set command and recomputing what fractions would be needed for each invocation to yield the results you are looking for.(which can be done in the head with some logical thinking).

axel.