querying fireworks from python using Launchpad object

[David_Michea]

Hello,

I would like to querying fireworks just like in this page of doc : https://materialsproject.github.io/fireworks/query_tutorial.html, but from python.

I can do it from the shell just as indicated in this page, but I need to get these information periodically in a python program

For the moment I use a subprocess to retrieve this information from the CLI (see below), but It would be much faster to do it from a Launchpad object in python …

def get_fws(discr, value):

if discr == "category":

	cmd = "lpad get_fws -q '{\"spec._category\": \"%s\"}' -d ids" % value

elif discr == "state":

	cmd = "lpad get_fws -s %s -d ids" % value

ids_json = subprocess.check_output(cmd, shell=True).decode('utf-8')

ids = json.loads(ids_json)

return ids

I haven’t find it in the doc. But I have found this on this list : launchpad.launches.find()

res = launchpad.launches.find({“spec._category”: “multiseq_long”}) -> may be ok: returns pymongo.cursor.Cursor

nb = launchpad.launches.count({“spec._category”: “multiseq_long”}) -> not OK : gives 0 (should be 26)

So it seems not to be the good way of doing it …

Could you provide us a way to do it ? in a first time, a count() will be sufficient, but an id list would be nice !

Best regards,
David

[Anubhav_Jain]

Hi David

The “lpad get_fws” command uses a two step process:

i) Launchpad.get_fw_ids() to get the list of matching FW ids

ii) Launchpad.get_fw_by_id() to get the details of a Firework once you know the ids

Part (ii) is straightforward. For (i) you will just need to pass in your Mongo query dict, e.g. something like {“spec._category”: “category1”}. Note that (i) only takes in a Mongo query dict and doesn’t take any other type of query (e.g., no direct query on state). To see how the other options like “get_fws -s FIZZLED” are translated into a Mongo query dict, look at fireworks.scripts.lpad_run.get_fws(). In fact, the entire source code for how to turn the command line options into Python is in that function.

Best,

Anubhav

···

On Fri, Sep 8, 2017 at 7:59 AM, [email protected] wrote:

Hello,

I would like to querying fireworks just like in this page of doc : https://materialsproject.github.io/fireworks/query_tutorial.html, but from python.

I can do it from the shell just as indicated in this page, but I need to get these information periodically in a python program

For the moment I use a subprocess to retrieve this information from the CLI (see below), but It would be much faster to do it from a Launchpad object in python …

def get_fws(discr, value):

if discr == “category”:

  cmd = "lpad get_fws -q '{\"spec._category\": \"%s\"}' -d ids" % value

elif discr == “state”:

  cmd = "lpad get_fws -s %s -d ids" % value

ids_json = subprocess.check_output(cmd, shell=True).decode(‘utf-8’)

ids = json.loads(ids_json)

return ids

I haven’t find it in the doc. But I have found this on this list : launchpad.launches.find()

res = launchpad.launches.find({“spec._category”: “multiseq_long”}) -> may be ok: returns pymongo.cursor.Cursor

nb = launchpad.launches.count({“spec._category”: “multiseq_long”}) -> not OK : gives 0 (should be 26)

So it seems not to be the good way of doing it …

Could you provide us a way to do it ? in a first time, a count() will be sufficient, but an id list would be nice !

Best regards,
David

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Best,
Anubhav

[David_Michea]

Hi Anubhav,

Thank you for the quick response. I managed to use the python interface. It works very fine now.

Thanks a lot !

Best regards,
David

···

Le vendredi 8 septembre 2017 18:03:44 UTC+2, ajain a écrit :

Hi David

The “lpad get_fws” command uses a two step process:

i) Launchpad.get_fw_ids() to get the list of matching FW ids

ii) Launchpad.get_fw_by_id() to get the details of a Firework once you know the ids

Part (ii) is straightforward. For (i) you will just need to pass in your Mongo query dict, e.g. something like {“spec._category”: “category1”}. Note that (i) only takes in a Mongo query dict and doesn’t take any other type of query (e.g., no direct query on state). To see how the other options like “get_fws -s FIZZLED” are translated into a Mongo query dict, look at fireworks.scripts.lpad_run.get_fws(). In fact, the entire source code for how to turn the command line options into Python is in that function.

Best,

Anubhav

On Fri, Sep 8, 2017 at 7:59 AM, [email protected] wrote:

Hello,

I would like to querying fireworks just like in this page of doc : https://materialsproject.github.io/fireworks/query_tutorial.html, but from python.

I can do it from the shell just as indicated in this page, but I need to get these information periodically in a python program

For the moment I use a subprocess to retrieve this information from the CLI (see below), but It would be much faster to do it from a Launchpad object in python …

def get_fws(discr, value):

if discr == "category":

  cmd = "lpad get_fws -q '{\"spec._category\": \"%s\"}' -d ids" % value

elif discr == "state":

  cmd = "lpad get_fws -s %s -d ids" % value

ids_json = subprocess.check_output(cmd, shell=True).decode('utf-8')

ids = json.loads(ids_json)

return ids

I haven’t find it in the doc. But I have found this on this list : launchpad.launches.find()

res = launchpad.launches.find({“spec._category”: “multiseq_long”}) -> may be ok: returns pymongo.cursor.Cursor

nb = launchpad.launches.count({“spec._category”: “multiseq_long”}) -> not OK : gives 0 (should be 26)

So it seems not to be the good way of doing it …

Could you provide us a way to do it ? in a first time, a count() will be sufficient, but an id list would be nice !

Best regards,
David

–

You received this message because you are subscribed to the Google Groups “fireworkflows” group.

To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].

To post to this group, send email to [email protected].

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To view this discussion on the web visit https://groups.google.com/d/msgid/fireworkflows/6b9ba4cb-f32a-4421-aaf1-e81b13ef2ee6%40googlegroups.com.

For more options, visit https://groups.google.com/d/optout.

–
Best,
Anubhav