@Joshkay There are multiple problems with your post:
- You posted to the wrong category. Your post has nothing to do with the “Materials Project”. You should have posted to “LAMMPS Beginners” instead
- You are not following the guidelines and suggestions for posting LAMMPS questions in multiple ways. Please read this and follow what is written there if you want to get constructive responses to your post
- Your quoted input is badly formatted and thus very hard to real and in parts unreadable due to not being properly quoted. Please see the guidelines to learn how.
- Your post does not provide any context information. Please see the guidelines to learn why.
- For a LAMMPS beginner, your input is long, complex, and convoluted. As a beginner, you should start with small inputs and grow them step by step
This is your job or the job of your tutor or adviser. How can you even expect someone to look at it without even explaining why you think that there could be a problem with it. This is not how an online forum works. Again, please see the guidelines for what you can and what you cannot expect from people that are volunteering their time.
There is a school of thought that suggests that the less detail and context information you provide, the less you distract people and the more likely you are to get help. The opposite is the case. Only if you have shown that you have invested yourself sufficient time to understand and resolve the problem yourself and share what you have figured out, will people be willing to take a look and help you. The more specific your description and question, the more likely will be that you get an answer. If you don’t get a meaningful response, then this means that either the question was not well enough formulated or that nobody around here knows how to answer it.