topotools

Hi everyone,

I am trying to use topotools for a Lammps simulation on DCPD polymer. I followed the instructions and everything on the website. I followed : "

Step 1c: Generate multiple molecules from one coordinate file" section and I have data file for two molecules but I cannot make a data file for more than two molecules. I have attached the .xyz file and .tcl files. I really really appreciate if you can help me on that.

Best Regards,
Elyas

DCPD.xyz (1.02 KB)

twochainsfromone.tcl (3.05 KB)

Hi everyone,

I am trying to use topotools for a Lammps simulation on DCPD polymer. I
followed the instructions and everything on the website. I followed : "
Step 1c: Generate multiple molecules from one coordinate file
" section and I have data file for two molecules but I cannot make a data
file for more than two molecules. I have attached the .xyz file and .tcl
files. I really really appreciate if you can help me on that.

​you are posting to the wrong forum for this. you are having a problem with
VMD, not LAMMPS.

axel.​