Message: 1

Date: Sun, 29 May 2011 05:56:53 -0700 (PDT)
From: Ramin Ekhteiari <ramin_ekh@…36…16…>
Subject: [lammps-users] vmd
To: lammps-users@…44…s.sourceforge.net
Message-ID: <587836.43518.qm@…2645…>
Content-Type: text/plain; charset=“us-ascii”

hi dear

when I dump my MD to vmd , I face with a lot of extra bonding between the atoms
especially the H2O atoms it is like with a lot of lines that damage my view . My
dump command is …

I guess you obtain the datafile from a file which have atom type information(e.g. xyz,pdb).If not, write one.
Then all is simple, you just run:

vmd ini.xyz dump.lammpstrj

All will be right.

Best wishes.