# ----------------- Init Section ----------------- include "solvent.in.init" # ----------------- Atom Definition Section ----------------- read_data "system.data" # ----------------- Settings Section ----------------- include "solvent.in.settings" # ----------------- Charges Section ----------------- include "solvent.in.charges" # ----------------- Run Section ----------------- thermo 100 # minimize 1.0e-5 1.0e-7 1000 10000 timestep 1.0 thermo_style custom step temp press density fix fxLAN all langevin 300.0 300.0 5000 48279 fix fxNVE all nve/limit 0.1 #(<--needed by fix langevin) dump 4a all custom 100 obs.dump id mol type xu yu zu run 10000 unfix fxLAN unfix fxNVE fix fxshake all shake 0.0001 20 0 b 9 a 17 fix fxnpt all npt temp 300.0 300.0 100.0 iso 1.0 1.0 1000.0 drag 1.0 #fix fxnvt all nvt temp 300 300 100 thermo 100 run 10000 #unfix fxnvt #fix fxnpt all npt temp 300.0 300.0 100.0 iso 1.0 1.0 1000.0 drag 1.0 #run 10000