LAMMPS (7 Aug 2019) OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:93) using 1 OpenMP thread(s) per MPI task Lattice spacing in x,y,z = 1.6796 1.6796 1.6796 Created orthogonal box = (0 0 0) to (16.796 16.796 16.796) 1 by 2 by 2 MPI processor grid Created 4000 atoms create_atoms CPU = 0.000808369 secs Neighbor list info ... update every 20 steps, delay 0 steps, check no max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 2.8 ghost atom cutoff = 2.8 binsize = 1.4, bins = 12 12 12 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair lj/cut, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d/newton bin: standard Setting up Verlet run ... Unit style : lj Current step : 0 Time step : 0.005 Per MPI rank memory allocation (min/avg/max) = 2.706 | 2.706 | 2.706 Mbytes Step Temp E_pair E_mol TotEng Press 0 3 -6.7733681 0 -2.2744931 -3.7033504 50 1.6754119 -4.7947589 0 -2.2822693 5.6615925 100 1.6503357 -4.756014 0 -2.2811293 5.8050524 150 1.6596605 -4.7699432 0 -2.2810749 5.7830138 200 1.6371874 -4.7365462 0 -2.2813789 5.9246674 250 1.6323462 -4.7292021 0 -2.2812949 5.9762238 Loop time of 0.211926 on 4 procs for 250 steps with 4000 atoms Performance: 509612.766 tau/day, 1179.659 timesteps/s 99.7% CPU use with 4 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0.14274 | 0.14975 | 0.16191 | 1.9 | 70.66 Neigh | 0.018744 | 0.019563 | 0.021072 | 0.6 | 9.23 Comm | 0.024969 | 0.038825 | 0.04594 | 4.3 | 18.32 Output | 8.2701e-05 | 9.1813e-05 | 0.00011314 | 0.0 | 0.04 Modify | 0.0023704 | 0.0026567 | 0.0027931 | 0.3 | 1.25 Other | | 0.001034 | | | 0.49 Nlocal: 1000 ave 1010 max 982 min Histogram: 1 0 0 0 0 0 1 0 0 2 Nghost: 2703.75 ave 2713 max 2689 min Histogram: 1 0 0 0 0 0 0 2 0 1 Neighs: 37915.5 ave 39239 max 36193 min Histogram: 1 0 0 0 0 1 1 0 0 1 Total # of neighbors = 151662 Ave neighs/atom = 37.9155 Neighbor list builds = 12 Dangerous builds not checked 1 2000 2 3000 2 1 3 3205 3 1 0 229 1 1 1 4.66368852079566e-310 4.66368852079685e-310 4.66368852079803e-310 3 4.6561169370122e-310 4.65611693701337e-310 4.65611693701456e-310 3 4.65611696291704e-310 4.6561169629182e-310 4.6561169629194e-310 0 1 0 4.64458552965233e-310 4.6445855296535e-310 4.6445855296547e-310 0 4.6445855555572e-310 4.64458555555836e-310 4.64458555555955e-310 2 4.68353122152756e-310 4.68353122152875e-310 4.68353122152994e-310 2 4.6835312474324e-310 4.6835312474336e-310 4.6835312474348e-310 1 4.6636885467005e-310 4.6636885467017e-310 4.6636885467029e-310 Total wall time: 0:00:00