read_restart Restart.file pair_style lj/cut/coul/long 13 pair_modify tail yes kspace_style pppm 1.0e-5 neighbor 2.0 bin neigh_modify delay 10 check yes compute HMOL all chunk/atom molecule compute MSD all msd/chunk HMOL fix TEMP all nvt temp 300 300 8 fix 11 all ave/time 1 1 1 c_MSD[*] file MSD.out mode vector fix 22 all ave/chunk 1 1 1 HMOL vz file tmp.vz thermo 50 thermo_style custom step temp pe ke etotal density reset_timestep 0 timestep 2 run 50