colvarsRestartFrequency 1 colvarsTrajFrequency 1 # output every 10 steps colvarsTrajAppend on analysis on abf { colvars d fullSamples 500 historyFreq 1 } colvar { name d width 0.1 lowerBoundary 7.0 upperBoundary 10.0 lowerWallConstant 50.0 upperWallConstant 50.0 outputAppliedForce yes corrFunc on corrFuncLength 150 corrFuncType coordinate corrFuncOutputFile correaltion.dat runAve on runAveLength 150 runAveOutputFile sigma.dat distanceZ { main { atomNumbers {121 124 127 128 129 131 132 133 135 138 141 142 143 145 146 147} } ref { atomNumbers {1 4 7 8 9 11 12 13 15 18 21 22 23 25 26 27} } } } colvar { name dxy width 0.1 upperBoundary 5.0 upperWallConstant 50.0 outputAppliedForce yes distanceXY { main { atomNumbers {121 124 127 128 129 131 132 133 135 138 141 142 143 145 146 147 } } ref { atomNumbers {1 4 7 8 9 11 12 13 15 18 21 22 23 25 26 27} } } }