units real atom_style full pair_style lj/cut/coul/long 10 12 kspace_style pppm 1.0e-4 bond_style harmonic angle_style harmonic dihedral_style opls improper_style harmonic read_data system.data velocity all create 300 432567 dist uniform group spce type 76 77 group surf type 90 group surf include molecule group ion type 349 group mol union surf ion molecule h2omol H2O.txt molecule surfmol surfmol.template #create_atoms 0 random 1 31415 NULL mol surfmol 464563 units box #create_atoms 349 random 1 4711247 NULL units box #group surf type 90 #group surf include molecule #group ion type 349 #set type 349 charge 1.0 #group mol union surf ion include "system.in.settings" special_bonds lj/coul 0.0 0.0 0.5 neighbor 2.0 bin neigh_modify every 1 delay 0 check yes minimize 1.0e-5 1.0e-7 2000 1000 fix wshake spce shake 0.0001 50 0 b 1 a 1 mol h2omol fix 2 all nvt temp 300.0 300.0 100.0 timestep 1.0 thermo_style one thermo 100 run 10000 #create_atoms 0 random 1 31415 NULL mol surfmol 464563 units box #create_atoms 349 random 1 4711247 NULL units box #group surf type 90 #group surf include molecule #group ion type 349 #set type 349 charge 1.0 #group mol union surf ion #unfix wshake #minimize 1.0e-5 1.0e-7 10000 10000 #fix wshake spce shake 0.0001 50 0 b 1 a 1 mol h2omol #write_dump all custom dump_aftermin.*.file id proc mol type x y z vx vy vz fx fy fz modify sort id #dump 1 all custom 10 dump_test_*.lammpstrj id mol type x y z vx vy vz fx fy fz #dump_modify 1 sort id run 10000 write_data system_rerun.data clear