units real atom_style full read_data DataFile.data neighbor 2.0 bin neigh_modify delay 0 every 1 check yes comm_modify mode single cutoff 25 vel yes timestep 1 fix 1 all move linear 0.0 0.0 0.0 units box reset_timestep 0 pair_style none bond_style zero nocoeff bond_coeff * angle_style zero nocoeff angle_coeff * dihedral_style zero nocoeff dihedral_coeff * improper_style zero nocoeff improper_coeff * compute 1_RDF_P1_P1 all rdf 200 1 1 cutoff 20 compute 2_RDF_P1_P2 all rdf 200 1 2 cutoff 20 compute 3_RDF_P1_P3 all rdf 200 1 3 cutoff 20 compute 4_RDF_P2_P2 all rdf 200 2 2 cutoff 20 compute 5_RDF_P2_P3 all rdf 200 2 3 cutoff 20 compute 6_RDF_P3_P3 all rdf 200 3 3 cutoff 20 fix 2 all ave/time 100 1 100 c_1_RDF_P1_P1[*] file 1_RDF_i0.rdf mode vector fix 3 all ave/time 100 1 100 c_2_RDF_P1_P2[*] file 2_RDF_i0.rdf mode vector fix 4 all ave/time 100 1 100 c_3_RDF_P1_P3[*] file 3_RDF_i0.rdf mode vector fix 5 all ave/time 100 1 100 c_4_RDF_P2_P2[*] file 4_RDF_i0.rdf mode vector fix 6 all ave/time 100 1 100 c_5_RDF_P2_P3[*] file 5_RDF_i0.rdf mode vector fix 7 all ave/time 100 1 100 c_6_RDF_P3_P3[*] file 6_RDF_i0.rdf mode vector dump 1 all custom 100 *_Monomer_Coordinates id mol type q xu yu zu vx vy vz compute b1 all property/local btype batom1 batom2 compute b2 all bond/local dist dump 2 all local 100 *_Bond_Analysis index c_b1[*] c_b2[*] compute a1 all property/local atype aatom1 aatom2 aatom3 compute a2 all angle/local theta dump 3 all local 100 *_Angle_Analysis index c_a1[*] c_a2[*] compute d1 all property/local dtype datom1 datom2 datom3 datom4 compute d2 all dihedral/local phi dump 4 all local 100 *_Dihedral_Analysis index c_d1[1] c_d1[2] c_d1[3] c_d1[4] c_d1[5] c_d2[*] compute i1 all property/local itype iatom1 iatom2 iatom3 iatom4 compute i2 all improper/local chi dump 5 all local 100 *_Improper_Analysis index c_i1[1] c_i1[2] c_i1[3] c_i1[4] c_i1[5] c_i2[1] run 100