# initialisation units lj atom_style hybrid ellipsoid molecular # bring in configuration read_data example.dat set type 1 shape 0.9 0.9 0.9 set type 2 shape 1.0 1.89 0.88 set type 1 mass 1.0 set type 2 mass 6.36 group core type 1 group int type 2 # pair styles pair_style gayberne 1 1 5 5.0 pair_coeff 1 2 1 1 0 0 0 0 0 0 1.5 pair_coeff 1 1 0.1 1 1 1 1 1 1 1 1.5 pair_coeff 2 2 10 1 1 0.01 0.01 1 0.01 0.01 # settings neighbor 2.0 bin neigh_modify exclude molecule all compute rottemp all temp/asphere dof all compute angmom all property/atom angmomx angmomy angmomz compute vel all property/atom vx vy vz compute mass all property/atom mass fix rigid all rigid/small molecule langevin 1.0 1.0 1.0 56489 compute rigke all ke/rigid rigid compute rigrot all erotate/rigid rigid variable rigtotke equal (c_rigke+c_rigrot)/count(all) compute ase all erotate/asphere compute ket all ke variable asphke equal (c_ase+c_ket)/count(all) thermo_style custom step c_rottemp ke v_asphke f_rigid v_rigtotke thermo_modify temp rottemp thermo 5000 timestep 0.03 run 200000