echo both units real atom_style charge boundary p p p #2 read_restart file1.10000.restart #3 mass 1 12.01 # mass of carbon atom pair_style reax/c NULL checkqeq yes # interatomic potential pair_coeff * * ffield.reax-2013.C C # coefficient for carbon atom fix 8 all qeq/reax 1 0.0 10.0 1.0e-6 reax/c #12 neighbor 2 bin neigh_modify every 1 delay 0 check yes #4 reset_timestep 0 compute msd all msd com yes variable twopoint equal c_msd[4]/6/(step*dt+1e-6) fix 9 all vector 10 c_msd[4] variable fitslope equal slope(f_9)/6/(10*dt) #5 timestep 0.5 # 0.5 fs thermo 250 thermo_style custom step time temp c_msd[4] v_twopoint v_fitslope dump 1 all custom 1000 C_reax_3500_nve.* id xs ys zs fx fy fz #7 restart 10000 file1.*.restart #8 equilibration run fix 3 all nve run 10000 # 5 ps