Scanning dependencies of target mpi_stubs [ 0%] Building C object CMakeFiles/mpi_stubs.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/STUBS/mpi.c.o [ 0%] Linking C static library libmpi_stubs.a [ 0%] Built target mpi_stubs Scanning dependencies of target lepton [ 0%] Building CXX object CMakeFiles/lepton.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/colvars/lepton/src/CompiledExpression.cpp.o [ 0%] Building CXX object CMakeFiles/lepton.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/colvars/lepton/src/ExpressionProgram.cpp.o [ 0%] Building CXX object CMakeFiles/lepton.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/colvars/lepton/src/ExpressionTreeNode.cpp.o [ 0%] Building CXX object CMakeFiles/lepton.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/colvars/lepton/src/Operation.cpp.o [ 0%] Building CXX object 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/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_file.cpp: In member function ‘virtual void CSLIB_NS::MsgFile::recv(int&, int*&, int&, char*&)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_file.cpp:125:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 125 | if (me == 0) fread(lengths,sizeof(int),2,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_file.cpp:132:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 132 | if (me == 0) fread(header,sizeof(int),nheader,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_file.cpp:135:21: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 135 | if (me == 0) fread(buf,1,nbuf,fp); | ~~~~~^~~~~~~~~~~~~~~ [ 0%] Building CXX object CMakeFiles/cslib.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_mpi_one.cpp.o [ 0%] Building CXX object CMakeFiles/cslib.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_mpi_two.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_mpi_two.cpp: In member function ‘void CSLIB_NS::MsgMPITwo::init(char*)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_mpi_two.cpp:60:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 60 | fgets(port,MPI_MAX_PORT_NAME,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 0%] Building CXX object CMakeFiles/cslib.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/lib/message/cslib/src/msg_zmq.cpp.o [ 0%] Linking CXX static library libcsnompi.a [ 0%] Built target cslib Scanning dependencies of target doc [ 0%] Generating requirements.txt Requirement already up-to-date: Sphinx in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (3.0.3) Requirement already satisfied, skipping upgrade: sphinxcontrib-htmlhelp in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.0.3) Requirement already satisfied, skipping upgrade: sphinxcontrib-devhelp in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-applehelp in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.0.2) Requirement already satisfied, skipping upgrade: sphinxcontrib-qthelp in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.0.3) Requirement already satisfied, skipping upgrade: docutils>=0.12 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (0.16) Requirement already satisfied, skipping upgrade: Jinja2>=2.3 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.11.2) Requirement already satisfied, skipping upgrade: setuptools in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (46.1.3) Requirement already satisfied, skipping upgrade: snowballstemmer>=1.1 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.0.0) Requirement already satisfied, skipping upgrade: alabaster<0.8,>=0.7 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (0.7.12) Requirement already satisfied, skipping upgrade: requests>=2.5.0 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.23.0) Requirement already satisfied, skipping upgrade: packaging in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (20.3) Requirement already satisfied, skipping upgrade: sphinxcontrib-jsmath in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.0.1) Requirement already satisfied, skipping upgrade: imagesize in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.2.0) Requirement already satisfied, skipping upgrade: babel>=1.3 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.8.0) Requirement already satisfied, skipping upgrade: sphinxcontrib-serializinghtml in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (1.1.4) Requirement already satisfied, skipping upgrade: Pygments>=2.0 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Sphinx->-r requirements.txt (line 1)) (2.6.1) Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from Jinja2>=2.3->Sphinx->-r requirements.txt (line 1)) (1.1.1) Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from requests>=2.5.0->Sphinx->-r requirements.txt (line 1)) (2.9) Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from requests>=2.5.0->Sphinx->-r requirements.txt (line 1)) (2020.4.5.1) Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from requests>=2.5.0->Sphinx->-r requirements.txt (line 1)) (3.0.4) Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from requests>=2.5.0->Sphinx->-r requirements.txt (line 1)) (1.25.9) Requirement already satisfied, skipping upgrade: six in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from packaging->Sphinx->-r requirements.txt (line 1)) (1.14.0) Requirement already satisfied, skipping upgrade: pyparsing>=2.0.2 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from packaging->Sphinx->-r requirements.txt (line 1)) (2.4.7) Requirement already satisfied, skipping upgrade: pytz>=2015.7 in /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/lib/python3.8/site-packages (from babel>=1.3->Sphinx->-r requirements.txt (line 1)) (2020.1) WARNING: You are using pip version 20.0.2; however, version 20.1 is available. You should consider upgrading via the '/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/bin/python -m pip install --upgrade pip' command. Processing /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/doc/utils/converters Building wheels for collected packages: LAMMPS-Documentation-Utilities Building wheel for LAMMPS-Documentation-Utilities (setup.py): started Building wheel for LAMMPS-Documentation-Utilities (setup.py): finished with status 'done' Created wheel for LAMMPS-Documentation-Utilities: filename=LAMMPS_Documentation_Utilities-2.0.0-py3-none-any.whl size=30934 sha256=c468f9b9c68b0d3839060ccc55f7ab2f4332e2eec0c315af3a0d399e34bccc9b Stored in directory: /tmp/pip-ephem-wheel-cache-nokilatu/wheels/12/13/b4/812b8e7ecfa4b3a0ff1318619b32aa946ab02a4c742ce286c4 Successfully built LAMMPS-Documentation-Utilities Installing collected packages: LAMMPS-Documentation-Utilities Attempting uninstall: LAMMPS-Documentation-Utilities Found existing installation: LAMMPS-Documentation-Utilities 2.0.0 Uninstalling LAMMPS-Documentation-Utilities-2.0.0: Successfully uninstalled LAMMPS-Documentation-Utilities-2.0.0 Successfully installed LAMMPS-Documentation-Utilities-2.0.0 WARNING: You are using pip version 20.0.2; however, version 20.1 is available. You should consider upgrading via the '/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/build_2020_04_30_serial/docenv/bin/python -m pip install --upgrade pip' command. [ 0%] Generating html Running Sphinx v3.0.3 loading pickled environment... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 0 source files that are out of date updating environment: 0 added, 0 changed, 0 removed looking for now-outdated files... none found no targets are out of date. build succeeded. The HTML pages are in html. 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CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/replicate.cpp.o [ 37%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/rerun.cpp.o [ 37%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/reset_ids.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/respa.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/run.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/set.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/special.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/thermo.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/timer.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/universe.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/update.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/utils.cpp.o [ 38%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp: In member function ‘int LAMMPS_NS::Variable::next(int, char**)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp:686:13: warning: ignoring return value of ‘int fscanf(FILE*, const char*, ...)’, declared with attribute warn_unused_result [-Wunused-result] 686 | fscanf(fp,"%d",&nextindex); | ~~~~~~^~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp: In member function ‘double LAMMPS_NS::Variable::evaluate(char*, LAMMPS_NS::Variable::Tree**, int)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp:4752:36: warning: ‘%s’ directive output may be truncated writing up to 127 bytes into a region of size 117 [-Wformat-truncation=] 2110 | print_var_error(FLERR,msg,ivar); | ~~~ ...... 4752 | snprintf(msg,128,"Variable %s: %s",names[ivar],errmsg); | ^~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/variable.cpp:14: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output 12 or more bytes (assuming 139) into a destination of size 128 67 | return 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CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/ewald.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/ewald_dipole.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/ewald_dipole_spin.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/ewald_disp.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fft3d.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fft3d_wrap.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp: In member function ‘virtual void LAMMPS_NS::FixTuneKspace::pre_exchange()’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:155:35: warning: ‘/long’ directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=] 155 | snprintf(new_pair_style,64,"%s/long",base_pair_style); | ^~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 6 and 69 bytes into a destination of size 64 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:160:37: warning: ‘/msm’ directive output may be truncated writing 4 bytes into a region of size between 1 and 64 [-Wformat-truncation=] 160 | snprintf(new_pair_style,64,"%s/msm",base_pair_style); | ^~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 68 bytes into a destination of size 64 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:144:35: warning: ‘/msm’ directive output may be truncated writing 4 bytes into a region of size between 1 and 64 [-Wformat-truncation=] 144 | snprintf(new_pair_style,64,"%s/msm",base_pair_style); | ^~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 5 and 68 bytes into a destination of size 64 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:137:35: warning: ‘/long’ directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=] 137 | snprintf(new_pair_style,64,"%s/long",base_pair_style); | ^~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 6 and 69 bytes into a destination of size 64 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:130:35: warning: ‘/long’ directive output may be truncated writing 5 bytes into a region of size between 1 and 64 [-Wformat-truncation=] 130 | snprintf(new_pair_style,64,"%s/long",base_pair_style); | ^~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/fix_tune_kspace.cpp:18: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 6 and 69 bytes into a destination of size 64 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/gridcomm.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/msm.cpp.o [ 44%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/KSPACE/msm_cg.cpp.o [ 44%] Building CXX object 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writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] 431 | snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.cpp:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 31 and 158 bytes into a destination of size 128 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.cpp: In member function ‘void LAMMPS_NS::FixSAEDVTK::options(int, char**)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.cpp:558:59: warning: ‘%s’ directive output may be truncated writing up to 127 bytes into a region of size 98 [-Wformat-truncation=] 558 | snprintf(str,128,"Cannot open fix saed/vtk file %s",nName); | ^~ ~~~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/pointers.h:27, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/fix.h:17, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.h:23, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DIFFRACTION/fix_saed_vtk.cpp:19: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 31 and 158 bytes into a destination of size 128 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/atom_vec_dpd.cpp.o [ 62%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/compute_dpd.cpp.o [ 62%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/compute_dpd_atom.cpp.o [ 62%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/fix_dpd_energy.cpp.o [ 62%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/fix_eos_cv.cpp.o [ 62%] Building CXX object 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value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 370 | for (int i = 0; i < tb->ninput; i++) fgets(line,MAXLINE,fp); | ~~~~~^~~~~~~~~~~~~~~~~ [ 63%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/pair_multi_lucy_rx.cpp.o [ 63%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DPD/pair_table_rx.cpp.o [ 63%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DRUDE/compute_temp_drude.cpp.o [ 63%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DRUDE/fix_drude.cpp.o [ 63%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-DRUDE/fix_drude_transform.cpp.o [ 63%] Building CXX object 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with attribute warn_unused_result [-Wunused-result] 187 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:203:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 203 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:246:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 246 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:306:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 306 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:329:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 329 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:331:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 331 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:334:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 334 | fgets(line,sizeof(line),in); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-MGPT/mgpt_readpot.cpp:343:10: warning: ignoring return value of 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/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_control.cpp:121:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 121 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp: In function ‘char Read_Force_Field(FILE*, reax_interaction*, control_params*)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:58:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 58 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:61:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 61 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:80:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 80 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:92:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 92 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:97:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 97 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:98:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 98 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:99:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 99 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:152:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 152 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:178:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 178 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:197:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 197 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:216:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 216 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:236:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 236 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:321:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 321 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:331:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 331 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:335:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 335 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:362:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 362 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:483:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 483 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 488 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:544:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 544 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:549:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 549 | fgets(s,MAX_LINE,fp); | ~~~~~^~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:602:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 602 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:607:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 607 | fgets( s, MAX_LINE, fp ); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_ffield.cpp:673:8: warning: ignoring return value of ‘char* fgets(char*, int, 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CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp: In member function ‘virtual void LAMMPS_NS::PairSMTBQ::read_file(char*)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:434:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 434 | fgets(ptr,MAXLINE,fp); | ~~~~~^~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:437:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 437 | fgets(ptr,MAXLINE,fp); | ~~~~~^~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:488:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 488 | fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); | ~~~~~^~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:492:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 492 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:500:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 500 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:509:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 509 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:527:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 527 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:541:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 541 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:564:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 564 | fgets(ptr,MAXLINE,fp); if (verbose) printf ("%s",ptr); | ~~~~~^~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:567:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 567 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:620:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 620 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:632:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 632 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:654:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 654 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:667:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 667 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:674:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 674 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:694:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 694 | fgets(ptr,MAXLINE,fp); | ~~~~~^~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:697:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 697 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:707:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 707 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:718:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 718 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:721:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 721 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:726:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 726 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:734:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 734 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:737:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 737 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:744:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 744 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:747:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 747 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:757:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 757 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:760:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 760 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:765:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 765 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:791:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 791 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:794:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 794 | fgets( ptr, MAXLINE, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-SMTBQ/pair_smtbq.cpp:802:8: warning: ignoring return value of ‘char* fgets(char*, int, 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CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/pair_tersoff_table_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/pair_reaxc_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/fix_nh_asphere_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/fix_rigid_nh_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_bond_orders_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_hydrogen_bonds_omp.cpp.o [ 94%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_nonbonded_omp.cpp.o [ 95%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_bonds_omp.cpp.o [ 95%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp: In function ‘void InitializeOMP(reax_system*, control_params*, simulation_data*, storage*, reax_list**, output_controls*, mpi_datatypes*, int)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:130:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 502 [-Wformat-truncation=] 130 | snprintf( errmsg, 512, "Error on: %s. " | ^~ 131 | "System could not be initialized! Terminating.", msg ); | ~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_types.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 58 and 1081 bytes into a destination of size 512 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:136:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 502 [-Wformat-truncation=] 136 | snprintf( errmsg, 512, "Error on: %s. " | ^~ 137 | "Sim_data couldn't be initialized! Terminating.", msg ); | ~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_types.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 59 and 1082 bytes into a destination of size 512 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:149:41: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 502 [-Wformat-truncation=] 149 | snprintf( errmsg, 512, "Error on: %s. " | ^~ 150 | "System could not be initialized! Terminating.", msg ); | ~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_types.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 58 and 1081 bytes into a destination of size 512 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:155:39: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 502 [-Wformat-truncation=] 155 | snprintf( errmsg, 512, "Error on: %s" | ^~ 156 | "Could not open output files! Terminating.", msg ); | ~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_types.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 52 and 1075 bytes into a destination of size 512 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:162:41: warning: ‘%s’ directive output may be truncated writing up to 1023 bytes into a region of size 502 [-Wformat-truncation=] 162 | snprintf( errmsg, 512, "Error on: %s." | ^~ 163 | " Couldn't create lookup table! Terminating.", msg ); | ~~~ In file included from /usr/include/stdio.h:867, from /usr/include/c++/9/cstdio:42, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-REAXC/reaxc_types.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.h:32, from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_init_md_omp.cpp:29: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:35: note: ‘__builtin___snprintf_chk’ output between 55 and 1078 bytes into a destination of size 512 67 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 95%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-OMP/reaxc_torsion_angles_omp.cpp.o [ 95%] Building CXX object 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CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_lj_cut_coul_long_intel.cpp.o [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_lj_long_coul_long_intel.cpp.o [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_airebo_intel.cpp.o [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_airebo_morse_intel.cpp.o [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_intel.cpp.o [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMAlloyIntel::read_file(char*)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 139 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 140 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 141 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 142 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 167 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_alloy_intel.cpp:187:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 187 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ [ 98%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp: In member function ‘virtual void LAMMPS_NS::PairEAMFSIntel::read_file(char*)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:139:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 139 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:140:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 140 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:141:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 141 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:142:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 142 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:167:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 167 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_eam_fs_intel.cpp:189:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 189 | fgets(line,MAXLINE,fptr); | ~~~~~^~~~~~~~~~~~~~~~~~~ [ 99%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_rebo_intel.cpp.o [ 99%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_sw_intel.cpp.o [ 99%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_tersoff_intel.cpp.o [ 99%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/pair_lj_charmm_coul_charmm_intel.cpp.o [ 99%] Building CXX object CMakeFiles/lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/src/USER-INTEL/verlet_lrt_intel.cpp.o [ 99%] Linking CXX executable lmp_serial [ 99%] Built target lmp Scanning dependencies of target binary2txt [ 99%] Building CXX object CMakeFiles/binary2txt.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp: In function ‘int main(int, char**)’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:97:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 97 | fread(&ntimestep,sizeof(bigint),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:107:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 107 | fread(&natoms,sizeof(bigint),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:108:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 108 | fread(&triclinic,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:109:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 109 | fread(&boundary[0][0],6*sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:110:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 110 | fread(&xlo,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:111:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 111 | fread(&xhi,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:112:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 112 | fread(&ylo,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:113:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 113 | fread(&yhi,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:114:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 114 | fread(&zlo,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:115:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 115 | fread(&zhi,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:117:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 117 | fread(&xy,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:118:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 118 | fread(&xz,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:119:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 119 | fread(&yz,sizeof(double),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:121:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 121 | fread(&size_one,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:122:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 122 | fread(&nchunk,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:159:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 159 | fread(&n,sizeof(int),1,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/binary2txt.cpp:171:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 171 | fread(buf,sizeof(double),n,fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ [ 99%] Linking CXX executable binary2txt [ 99%] Built target binary2txt Scanning dependencies of target msi2lmp [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/CheckLists.c.o [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/GetParameters.c.o [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/InitializeItems.c.o [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/MakeLists.c.o [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c: In function ‘ReadCarFile’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:101:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 101 | fgets(line,MAX_LINE_LENGTH,CarF); /* Read header line */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:108:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 108 | fgets(line,MAX_LINE_LENGTH,CarF); /* Comment line */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:109:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 109 | fgets(line,MAX_LINE_LENGTH,CarF); /* Date stamp */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:110:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 110 | fscanf(CarF,"%*s %lf %lf %lf %lf %lf %lf %*s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 | &pbc[0],&pbc[1],&pbc[2],&pbc[3],&pbc[4],&pbc[5]); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:124:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 124 | fgets(line,MAX_LINE_LENGTH, CarF); /* Comment line */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:125:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 125 | fgets(line,MAX_LINE_LENGTH, CarF); /* Date Stamp */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:146:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 146 | fgets(line,MAX_LINE_LENGTH,CarF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:180:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 180 | fgets(line,MAX_LINE_LENGTH,CarF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:189:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] 189 | fscanf(CarF,"%s %lf %lf %lf %*s %d %s %s %lf", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 | atoms[k].name, | ~~~~~~~~~~~~~~ 191 | &(atoms[k].x[0]), | ~~~~~~~~~~~~~~~~~ 192 | &(atoms[k].x[1]), | ~~~~~~~~~~~~~~~~~ 193 | &(atoms[k].x[2]), | ~~~~~~~~~~~~~~~~~ 194 | &(atoms[k].molecule), | ~~~~~~~~~~~~~~~~~~~~~ 195 | atoms[k].potential, | ~~~~~~~~~~~~~~~~~~~ 196 | atoms[k].element, | ~~~~~~~~~~~~~~~~~ 197 | &(atoms[k].q)); | ~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:209:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 209 | fgets(line,MAX_LINE_LENGTH,CarF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:210:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 210 | fgets(line,MAX_LINE_LENGTH,CarF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:155:38: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 155 | molecule = (struct MoleculeList *) calloc(no_molecules, | ^~~~~~~~~~~~~~~~~~~~ 156 | sizeof(struct MoleculeList)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadCarFile.c:8: /usr/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ [ 99%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadFrcFile.c.o [100%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/ReadMdfFile.c.o [100%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c.o /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c: In function ‘SearchAndFill’: /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c:114:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 114 | fgets(line, MAX_LINE_LENGTH, FrcF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c:119:3: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 119 | fgets(line, MAX_LINE_LENGTH, FrcF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c:121:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 121 | fgets( line, MAX_LINE_LENGTH, FrcF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/SearchAndFill.c:223:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] 223 | fgets( line, MAX_LINE_LENGTH, FrcF); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [100%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/WriteDataFile.c.o [100%] Building C object CMakeFiles/msi2lmp.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/msi2lmp/src/msi2lmp.c.o [100%] Linking C executable msi2lmp [100%] Built target msi2lmp Scanning dependencies of target chain.x [100%] Building Fortran object CMakeFiles/chain.x.dir/home/unameplaceholder/afstuderen/lammps/lammps2020apr28/tools/chain.f.o [100%] Linking Fortran executable chain.x [100%] Built target chain.x