/* ---------------------------------------------------------------------- LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator http://lammps.sandia.gov, Sandia National Laboratories Steve Plimpton, sjplimp@sandia.gov Copyright (2003) Sandia Corporation. Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains certain rights in this software. This software is distributed under the GNU General Public License. See the README file in the top-level LAMMPS directory. ------------------------------------------------------------------------- */ #include "string.h" #include "stdlib.h" #include "fix_addvelocity.h" #include "atom.h" #include "atom_masks.h" #include "accelerator_kokkos.h" #include "update.h" #include "modify.h" #include "domain.h" #include "region.h" #include "respa.h" #include "input.h" #include "variable.h" #include "memory.h" #include "error.h" #include "force.h" using namespace LAMMPS_NS; using namespace FixConst; enum{NONE,CONSTANT,EQUAL,ATOM}; /* ---------------------------------------------------------------------- */ FixAddVelocity::FixAddVelocity(LAMMPS *lmp, int narg, char **arg) : Fix(lmp, narg, arg) { if (narg < 6) error->all(FLERR,"Illegal fix addvelocity command"); dynamic_group_allow = 1; scalar_flag = 1; vector_flag = 1; size_vector = 3; global_freq = 1; extscalar = 1; extvector = 1; xstr = ystr = zstr = NULL; if (strstr(arg[3],"v_") == arg[3]) { int n = strlen(&arg[3][2]) + 1; xstr = new char[n]; strcpy(xstr,&arg[3][2]); } else { xvalue = force->numeric(FLERR,arg[3]); xstyle = CONSTANT; } if (strstr(arg[4],"v_") == arg[4]) { int n = strlen(&arg[4][2]) + 1; ystr = new char[n]; strcpy(ystr,&arg[4][2]); } else { yvalue = force->numeric(FLERR,arg[4]); ystyle = CONSTANT; } if (strstr(arg[5],"v_") == arg[5]) { int n = strlen(&arg[5][2]) + 1; zstr = new char[n]; strcpy(zstr,&arg[5][2]); } else { zvalue = force->numeric(FLERR,arg[5]); zstyle = CONSTANT; } // optional args nevery = 1; iregion = -1; idregion = NULL; estr = NULL; int iarg = 6; while (iarg < narg) { if (strcmp(arg[iarg],"every") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix addvelocity command"); nevery = atoi(arg[iarg+1]); if (nevery <= 0) error->all(FLERR,"Illegal fix addvelocity command"); iarg += 2; } else if (strcmp(arg[iarg],"region") == 0) { if (iarg+2 > narg) error->all(FLERR,"Illegal fix addvelocity command"); iregion = domain->find_region(arg[iarg+1]); if (iregion == -1) error->all(FLERR,"Region ID for fix addvelocity does not exist"); int n = strlen(arg[iarg+1]) + 1; idregion = new char[n]; strcpy(idregion,arg[iarg+1]); iarg += 2; } else error->all(FLERR,"Illegal fix addvelocity command"); } velocity_flag = 0; voriginal[0] = voriginal[1] = voriginal[2] = voriginal[3] = 0.0; maxatom = atom->nmax; memory->create(svelocity,maxatom,4,"addvelocity:svelocity"); } /* ---------------------------------------------------------------------- */ FixAddVelocity::~FixAddVelocity() { delete [] xstr; delete [] ystr; delete [] zstr; delete [] estr; delete [] idregion; memory->destroy(svelocity); } /* ---------------------------------------------------------------------- */ int FixAddVelocity::setmask() { datamask_read = datamask_modify = 0; int mask = 0; mask |= POST_FORCE; mask |= THERMO_ENERGY; mask |= POST_FORCE_RESPA; mask |= MIN_POST_FORCE; return mask; } /* ---------------------------------------------------------------------- */ void FixAddVelocity::init() { // check variables if (xstr) { xvar = input->variable->find(xstr); if (xvar < 0) error->all(FLERR,"Variable name for fix addvelocity does not exist"); if (input->variable->equalstyle(xvar)) xstyle = EQUAL; else if (input->variable->atomstyle(xvar)) xstyle = ATOM; else error->all(FLERR,"Variable for fix addvelocity is invalid style"); } if (ystr) { yvar = input->variable->find(ystr); if (yvar < 0) error->all(FLERR,"Variable name for fix addvelocity does not exist"); if (input->variable->equalstyle(yvar)) ystyle = EQUAL; else if (input->variable->atomstyle(yvar)) ystyle = ATOM; else error->all(FLERR,"Variable for fix addvelocity is invalid style"); } if (zstr) { zvar = input->variable->find(zstr); if (zvar < 0) error->all(FLERR,"Variable name for fix addvelocity does not exist"); if (input->variable->equalstyle(zvar)) zstyle = EQUAL; else if (input->variable->atomstyle(zvar)) zstyle = ATOM; else error->all(FLERR,"Variable for fix addvelocity is invalid style"); } if (estr) { evar = input->variable->find(estr); if (evar < 0) error->all(FLERR,"Variable name for fix addvelocity does not exist"); if (input->variable->atomstyle(evar)) estyle = ATOM; else error->all(FLERR,"Variable for fix addvelocity is invalid style"); } else estyle = NONE; // set index and check validity of region if (iregion >= 0) { iregion = domain->find_region(idregion); if (iregion == -1) error->all(FLERR,"Region ID for fix addvelocity does not exist"); } if (xstyle == ATOM || ystyle == ATOM || zstyle == ATOM) varflag = ATOM; else if (xstyle == EQUAL || ystyle == EQUAL || zstyle == EQUAL) varflag = EQUAL; else varflag = CONSTANT; if (strstr(update->integrate_style,"respa")) nlevels_respa = ((Respa *) update->integrate)->nlevels; } /* ---------------------------------------------------------------------- */ void FixAddVelocity::setup(int vflag) { if (strstr(update->integrate_style,"verlet")) post_force(vflag); else { ((Respa *) update->integrate)->copy_flevel_f(nlevels_respa-1); post_force_respa(vflag,nlevels_respa-1,0); ((Respa *) update->integrate)->copy_f_flevel(nlevels_respa-1); } } /* ---------------------------------------------------------------------- */ void FixAddVelocity::min_setup(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixAddVelocity::post_force(int vflag) { double **x = atom->x; double **v = atom->v; int *mask = atom->mask; imageint *image = atom->image; int nlocal = atom->nlocal; if (update->ntimestep % nevery) return; if (lmp->kokkos) atom->sync_modify(Host, (unsigned int) (F_MASK | MASK_MASK), (unsigned int) F_MASK); // update region if necessary Region *region = NULL; if (iregion >= 0) { region = domain->regions[iregion]; region->prematch(); } // reallocate svelocity array if necessary if ((varflag == ATOM || estyle == ATOM) && nlocal > maxatom) { maxatom = atom->nmax; memory->destroy(svelocity); memory->create(svelocity,maxatom,4,"addvelocity:svelocity"); } // foriginal[0] = "magnitude" for added velocity // foriginal[123] = velocity on atoms before extra velocity added voriginal[0] = voriginal[1] = voriginal[2] = voriginal[3] = 0.0; velocity_flag = 0; // constant velocity // potential energy = - x dot f in unwrapped coords if (varflag == CONSTANT) { double unwrap[3]; for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (region && !region->match(x[i][0],x[i][1],x[i][2])) continue; //domain->unmap(x[i],image[i],unwrap); voriginal[0] -= xvalue*xvalue + yvalue*yvalue + zvalue*zvalue; voriginal[1] += v[i][0]; voriginal[2] += v[i][1]; voriginal[3] += v[i][2]; v[i][0] += xvalue; v[i][1] += yvalue; v[i][2] += zvalue; } // variable velocity, wrap with clear/add // potential energy = evar if defined, else 0.0 // wrap with clear/add } else { modify->clearstep_compute(); if (xstyle == EQUAL) xvalue = input->variable->compute_equal(xvar); else if (xstyle == ATOM) input->variable->compute_atom(xvar,igroup,&svelocity[0][0],4,0); if (ystyle == EQUAL) yvalue = input->variable->compute_equal(yvar); else if (ystyle == ATOM) input->variable->compute_atom(yvar,igroup,&svelocity[0][1],4,0); if (zstyle == EQUAL) zvalue = input->variable->compute_equal(zvar); else if (zstyle == ATOM) input->variable->compute_atom(zvar,igroup,&svelocity[0][2],4,0); if (estyle == ATOM) input->variable->compute_atom(evar,igroup,&svelocity[0][3],4,0); modify->addstep_compute(update->ntimestep + 1); for (int i = 0; i < nlocal; i++) if (mask[i] & groupbit) { if (region && !region->match(x[i][0],x[i][1],x[i][2])) continue; //if (estyle == ATOM) foriginal[0] += sforce[i][3]; voriginal[1] += v[i][0]; voriginal[2] += v[i][1]; voriginal[3] += v[i][2]; if (xstyle == ATOM) v[i][0] += svelocity[i][0]; else if (xstyle) v[i][0] += xvalue; if (ystyle == ATOM) v[i][1] += svelocity[i][1]; else if (ystyle) v[i][1] += yvalue; if (zstyle == ATOM) v[i][2] += svelocity[i][2]; else if (zstyle) v[i][2] += zvalue; } } } /* ---------------------------------------------------------------------- */ void FixAddVelocity::post_force_respa(int vflag, int ilevel, int iloop) { if (ilevel == nlevels_respa-1) post_force(vflag); } /* ---------------------------------------------------------------------- */ void FixAddVelocity::min_post_force(int vflag) { post_force(vflag); } /* ---------------------------------------------------------------------- potential energy of added force ------------------------------------------------------------------------- */ double FixAddVelocity::compute_scalar() { // only sum across procs one time if (velocity_flag == 0) { MPI_Allreduce(voriginal,voriginal_all,4,MPI_DOUBLE,MPI_SUM,world); velocity_flag = 1; } return voriginal_all[0]; } /* ---------------------------------------------------------------------- return components of total velocity on fix group before velocity was changed ------------------------------------------------------------------------- */ double FixAddVelocity::compute_vector(int n) { // only sum across procs one time if (velocity_flag == 0) { MPI_Allreduce(voriginal,voriginal_all,4,MPI_DOUBLE,MPI_SUM,world); velocity_flag = 1; } return voriginal_all[n+1]; } /* ---------------------------------------------------------------------- memory usage of local atom-based array ------------------------------------------------------------------------- */ double FixAddVelocity::memory_usage() { double bytes = 0.0; if (varflag == ATOM) bytes = atom->nmax*4 * sizeof(double); return bytes; }