LAMMPS (14 May 2016) WARNING: OMP_NUM_THREADS environment is not set. (../comm.cpp:90) using 1 OpenMP thread(s) per MPI task Reading data file ... orthogonal box = (-20 -20 -20) to (20 20 20) 1 by 2 by 2 MPI processor grid reading atoms ... 642 atoms scanning bonds ... 18 = max bonds/atom reading bonds ... 6111 bonds Finding 1-2 1-3 1-4 neighbors ... Special bond factors lj: 0 0 0 Special bond factors coul: 0 0 0 20 = max # of 1-2 neighbors 360 = max # of 1-3 neighbors 6845 = max # of 1-4 neighbors 188 = max # of special neighbors Lattice spacing in x,y,z = 1 1 1 Lattice spacing in x,y,z = 1.12625 1.12625 1.12625 Created 35937 atoms 642 atoms in group colloid Setting atom values ... 35937 settings made for mass Setting atom values ... 35937 settings made for diameter 35937 atoms in group fluid SRD info: SRD/big particles = 35937 0 big particle diameter max/min = 0 1e+20 SRD temperature & lamda = 1 0.05 SRD max distance & max velocity = 0.2 4 SRD streaming and collision time steps = 0.05 0.05 SRD grid counts: 20 20 20 SRD grid size: request, actual (xyz) = 2, 2 2 2 SRD per actual grid cell = 4.49212 Mass of SRD particles = 1 SRD viscosity = 3.48938 big/SRD mass density ratio = 0 # of rescaled SRD velocities = 0 ave/max fluid velocity = 1.66343 2.96235 Neighbor list info ... 0 neighbor list requests update every 1 steps, delay 1 steps, check no max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 0 ghost atom cutoff = 0 binsize = 40, bins = 1 1 1 Setting up Verlet run ... Unit style : lj Current step: 0 Time step : 0.05 ERROR on proc 3: Bond atom missing in image check (../domain.cpp:754) ERROR on proc 0: Bond atom missing in image check (../domain.cpp:754) ERROR on proc 1: Bond atom missing in image check (../domain.cpp:754) ERROR on proc 2: Bond atom missing in image check (../domain.cpp:754) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 1 in communicator MPI_COMM_WORLD with errorcode 1.