echo both units real boundary p p f processors * * 1 timestep 1 atom_style full read_data wet.data #group atoms to molecules group O type 2 group H type 1 group carbon type 3 group water type 1 2 # water model: spc/e set type 1 charge 0.4238 set type 2 charge -0.8476 pair_style lj/cut/coul/long 12.0 pair_coeff 3 3 0.01544 3.214 #C-C pair_coeff 1 1 0.0 0.0 #H-H pair_coeff 2 2 0.1553 3.166 #O-O pair_coeff 1 3 0.0 1.607 #H-C pair_coeff 2 3 0.04896 3.19 #O-C pair_coeff 1 2 0.0 0.0 #H-O bond_style harmonic angle_style harmonic bond_coeff 1 1000.00 1.000 # H-O angle_coeff 1 100.0 109.47 #H-O-H neighbor 2 bin neigh_modify exclude group carbon carbon neigh_modify delay 0 every 1 check yes velocity carbon set 0 0 0 units box fix NOFORCE1 carbon setforce 0 0 0 fix top all wall/reflect zlo 0.0 zhi 110.7 units box velocity water set 0.0 0.0 0.0 ############## region le_sphere sphere 49.0 50.0 28.0 29.0 fix wall1 water wall/region le_sphere harmonic 1000000.0 0.0 2.5 ################### kspace_style pppm 1.0e-6 kspace_modify slab 3.0 minimize 1.0e-4 1.0e-6 1000 10000 fix 1 water shake 1.0e-4 20 10000 b 1 a 1 fix NVT1 water nvt temp 1.0 300.0 100.0 #Tdamp 100 compute com water com reset_timestep 0 thermo_style custom step c_NVT1_temp pe ke c_com[*] thermo 1000 log logequi.txt dump 1 all custom 10000 dump1.lammpstrj id type xu yu zu run 250000 undump 1 reset_timestep 0 #######################################################