Dear Lammpsers,
I've been trying to compile my LAMMPS with the colvars package, but it does not seem to work, even though I made the lib steps as in documentation. Could anyone suggest what I could do?
Thank you so very much again
With best wishes,
Anna
/home/anna/Downloads/lammps-14Mar13/src/STUBS/libmpi_stubs.a -o ../lmp_serial
colvarproxy_lammps.o: In function `colvarproxy_lammps::load_atoms(char const*, std::vector<colvarmodule::atom, std::allocator<colvarmodule::atom> >&, std::string, double)':
colvarproxy_lammps.cpp:(.text+0x22f): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.o: In function `colvarproxy_lammps::load_coords(char const*, std::vector<colvarmodule::rvector, std::allocator<colvarmodule::rvector> >&, std::vector<int, std::allocator<int> > const&, std::string, double)':
colvarproxy_lammps.cpp:(.text+0x2a1): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.o: In function `colvarproxy_lammps::compute()':
colvarproxy_lammps.cpp:(.text+0x563): undefined reference to `colvarmodule::it'
colvarproxy_lammps.cpp:(.text+0x57f): undefined reference to `colvarmodule::calc()'
colvarproxy_lammps.o: In function `colvarmodule:
:atom(int const&, std::string const&, std::string const&)':
colvarproxy_lammps.cpp:(.text+0x5e9): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.o: In function `colvarmodule::atom(colvarmodule::atom const&)':
colvarproxy_lammps.cpp:(.text+0x695): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.o: In function `colvarmodule::~atom()':
colvarproxy_lammps.cpp:(.text+0x6aa): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.o: In function `colvarmodule::read_position()':
colvarproxy_lammps.cpp:(.text+0x6cb): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.o: In function `colvarmodule::read_velocity()':
colvarproxy_lammps.cpp:(.text+0x72d): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.o: In function `colvarmodule::read_system_force()':
colvarproxy_lammps.cpp:(.text+0x783): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.o: In function `colvarmodule::apply_force(colvarmodule::rvector const&)':
colvarproxy_lammps.cpp:(.text+0x7ef): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.o: In function `pdb_field_str2enum(std::string const&)':
colvarproxy_lammps.cpp:(.text+0x107e): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.o: In function `colvarproxy_lammps::~colvarproxy_lammps()':
colvarproxy_lammps.cpp:(.text+0x1221): undefined reference to `colvarmodule::write_output_files()'
colvarproxy_lammps.cpp:(.text+0x1232): undefined reference to `colvarmodule::~colvarmodule()'
colvarproxy_lammps.o: In function `colvarproxy_lammps::colvarproxy_lammps(LAMMPS_NS::LAMMPS*, char const*, char const*, char const*, int, double, int const*)':
colvarproxy_lammps.cpp:(.text+0x17ee): undefined reference to `colvarmodule::colvarmodule(char const*, colvarproxy*)'
colvarproxy_lammps.cpp:(.text+0x1822): undefined reference to `colvarmodule::log(std::string const&)'
colvarproxy_lammps.cpp:(.text+0x1869): undefined reference to `colvarmodule::it_restart'
colvarproxy_lammps.cpp:(.text+0x1870): undefined reference to `colvarmodule::it'
colvarproxy_lammps.o: In function `colvarmodule::atom(int const&)':
colvarproxy_lammps.cpp:(.text+0x1fe2): undefined reference to `colvarmodule::fatal_error(std::string const&)'
colvarproxy_lammps.cpp:(.text+0x2096): undefined reference to `colvarmodule::proxy'
colvarproxy_lammps.cpp:(.text+0x2110): undefined reference to `colvarmodule::fatal_error(std::string const&)'
collect2: error: ld returned 1 exit status
make[1]: *** [../lmp_serial] Error 1
make[1]: Leaving directory `/home/anna/Downloads/lammps-14Mar13/src/Obj_serial'