Hi all
The LAMMPS installation on our cluster is performed successfully. I can run examples of LAMMPS such as peptide that it has kspace style and crack that it has not it successfully on all nodes and in parallel. But when I want to run a system containing water molecules that they have kspace style I have the following error.
[elena@…2728… W]$ ~/MPICH2/bin/mpiexec -n 4 ./lmp_openmpi <in
[proxy:0:0@…2728…] HYD_pmcd_pmip_control_cmd_cb (./pm/pmiserv/pmip_cb.c:959): assert (!closed) failed
[proxy:0:0@…2728…] HYDT_dmxu_poll_wait_for_event (./tools/demux/demux_poll.c:77): callback returned error status
[proxy:0:0@…2728…] main (./pm/pmiserv/pmip.c:226): demux engine error waiting for event
[mpiexec@…2728…] control_cb (./pm/pmiserv/pmiserv_cb.c:215): assert (!closed) failed
[mpiexec@…2728…] HYDT_dmxu_poll_wait_for_event (./tools/demux/demux_poll.c:77): callback returned error status
[mpiexec@…2728…] HYD_pmci_wait_for_completion (./pm/pmiserv/pmiserv_pmci.c:179): error waiting for event
[mpiexec@…2728…] main (./ui/mpich/mpiexec.c:397): process manager error waiting for completion
Would you please help me to remove it?
Thanks alot
Best Regards
Elena
Hi all
The LAMMPS installation on our cluster is performed successfully. I can run
examples of LAMMPS such as peptide that it has kspace style and crack that
it has not it successfully on all nodes and in parallel. But when I want to
run a system containing water molecules that they have kspace style I have
the following error.
[[email protected]... W]$ ~/MPICH2/bin/mpiexec -n 4 ./lmp_openmpi <in
[proxy:0:[email protected]...] HYD_pmcd_pmip_control_cmd_cb
(./pm/pmiserv/pmip_cb.c:959): assert (!closed) failed
[proxy:0:[email protected]...] HYDT_dmxu_poll_wait_for_event
(./tools/demux/demux_poll.c:77): callback returned error status
[proxy:0:[email protected]...] main (./pm/pmiserv/pmip.c:226): demux engine error
waiting for event
[[email protected]...] control_cb (./pm/pmiserv/pmiserv_cb.c:215): assert
(!closed) failed
[[email protected]...] HYDT_dmxu_poll_wait_for_event
(./tools/demux/demux_poll.c:77): callback returned error status
[[email protected]...] HYD_pmci_wait_for_completion
(./pm/pmiserv/pmiserv_pmci.c:179): error waiting for event
[[email protected]...] main (./ui/mpich/mpiexec.c:397): process manager error
waiting for completion
Would you please help me to remove it?
this is impossible to do. all the information you provide is
specific to your MPI software and contains _no_ information
as to _why_ it is failing. it could be a simple error in your
input or a miscompiled executable. you need to get help
from a local system administrator that can help you track
down the original cause for failure.
cheers,
axel.