Hello!
At this moment, I am trying to simulate a deformation behavior of Nickel polycrystal.
Problems
- Since I used “s s s” non-periodic boundary condition, explicit movement must be applied.
- However, “fix move” shows a erratic behavior that suddenly jumps from certain point.
Brief explanation for simulation
- Polycrystal has been generated by “atomsk”.
- Generated polycrystal was processed by LAMMPS input script to shape specimen.
- generated polycrystal equilibrated under “s p s” boundary condition, with NPT ensenble.
- boundary condition changed to “s s s” condition
- “fix move” applied into small region in the end of each side of y-axis
- nve integration applied, and run 100,000 steps
Log
Per MPI rank memory allocation (min/avg/max) = 22.82 | 23.35 | 23.88 Mbytes
Step Lx Ly Lz Press Pxx Pyy Pzz PotEng Temp v_stanum
0 266.09915 883.10215 33.000145 -197.3738 -114.23973 -290.35889 -187.52279 -1421316.7 300.88052 212606
1 266.09915 883.10215 33.000145 -413.63069 -294.12715 -476.37951 -470.38539 -1419566.5 293.3014 212606
2 266.09915 883.10215 33.000145 -413.05097 -291.83059 -476.05783 -471.26449 -1419565 293.26594 212606
3 266.09915 883.10215 33.000145 -412.40369 -289.48266 -475.61811 -472.1103 -1419563.4 293.22877 212606
4 266.09915 883.10215 33.000145 -411.66387 -287.06674 -475.03305 -472.89181 -1419561.7 293.19018 212606
5 266.09915 883.10215 33.000145 -410.82881 -284.59973 -474.28065 -473.60604 -1419560 293.15045 212606
6 266.09915 883.10215 33.000145 -409.91208 -282.09717 -473.38807 -474.25099 -1419558.3 293.10989 212606
7 266.09915 883.10215 33.000145 -408.92161 -279.56248 -472.3665 -474.83586 -1419556.5 293.06881 212606
8 266.09915 883.10215 33.000145 -407.85431 -277.0028 -471.20248 -475.35764 -1419554.7 293.02757 212606
9 266.09915 883.10215 33.000145 -406.74203 -274.44464 -469.93856 -475.84291 -1419553 292.98648 212606
10 318.91517 905.36291 60.930201 -200.29336 -124.42642 -284.82451 -191.62915 -1420412 292.94598 212606
Loop time of 0.155598 on 8 procs for 10 steps with 331426 atoms
after that, I’ve changed the script to separate run by two.
as you can see in below,