ERROR: Domain too large for neighbor bins

First of all, please read this post first and correctly quote your input file, add LAMMPS version, etc.

The error you get is simply due to a bad initial structure. The minimisation cannot fix the fact that you are squeezing too many atoms in your box size. I suggest using a lattice value that matches the sigma of your atoms, i.e. lattice sc 3.1586.

That’s your input system That’s what you want
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