How to Avoid FENE Bond Cross Talk

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1

Dear All,

I use moltemplate to create 10 beads, eight backbones and two end beads:

single.PNG

then use this small system to build a larger system. After using soft potential to relax
the system, I use VMD to see the process and find that the bonds are cross talk:

cross.PNG

How to avoid this?

Best Wishes!

2

I think that is a viz Q (for VMD) not a moltemplate
or LAMMPS Q.

Steve

single.PNG

cross.PNG