Dear LAMMPS community,
I have the second problem on the updated version of LAMMPS (11 July). Everything is working in the older version (April).
The first part of the simulation of hybrid granular dipole particles filling the container is working perfectly. However, when I restart simulation like this:
boundary f f f
newton off
communicate single vel yes
read_restart lidmove*.back
reset_timestep 0
neighbor 0.20000E+02 bin
neigh_modify delay 0
pair_style hybrid/overlay gran/hertz/history 0.203943E+13 0.135962E+13 0.159665E-01 NULL 0.5 1 lj/cut/dipole/cut 2.5000
pair_coeff 1 1 gran/hertz/history
pair_coeff 1 1 lj/cut/dipole/cut 0.0 0.0 2.5000 2.5000
pair_coeff 1 2 gran/hertz/history
pair_coeff 1 2 lj/cut/dipole/cut 0.0 0.0 2.5000 2.5000
pair_coeff 2 2 gran/hertz/history
pair_coeff 2 2 lj/cut/dipole/cut 0.0 0.0 2.5000 2.5000
fix 2 all gravity 1.0 spherical 0.0 -180.0
fix xwalls2 granul wall/gran 0.203943E+13 0.135962E+13 0.159665E-01 NULL 0.5 1 xplane 0 0.1000E+02
fix ywalls2 granul wall/gran 0.203943E+13 0.135962E+13 0.159665E-01 NULL 0.5 1 yplane 0 0.1000E+02
fix zwalls2 granul wall/gran 0.203943E+13 0.135962E+13 0.159665E-01 NULL 0.5 1 zplane 0 0.1164E+02
delete_atoms
I have the following error:
[umt206:05081] *** Process received signal ***
[umt206:05081] Signal: Segmentation fault (11)
[umt206:05081] Signal code: Address not mapped (1)
[umt206:05081] Failing at address: 0x24
[umt206:05081] [ 0] /lib64/libpthread.so.0(+0xf500) [0x7fd05ed70500]
[umt206:05081] [ 1] ./lmp_mkl_jul(_ZN9LAMMPS_NS15FixShearHistory14unpack_restartEii+0x7c) [0x6dde7c]
[umt206:05081] [ 2] ./lmp_mkl_jul(ZN9LAMMPS_NS6Modify7add_fixEiPPcS1+0x7b4d) [0x77c2bd]
[umt206:05081] [ 3] ./lmp_mkl_jul(_ZN9LAMMPS_NS20PairGranHookeHistory10init_styleEv+0x421) [0x899081]
[umt206:05081] [ 4] ./lmp_mkl_jul(_ZN9LAMMPS_NS10PairHybrid10init_styleEv+0xf0) [0x8a2290]
[umt206:05081] [ 5] ./lmp_mkl_jul(_ZN9LAMMPS_NS4Pair4initEv+0x1b1) [0x86ebe1]
[umt206:05081] [ 6] ./lmp_mkl_jul(_ZN9LAMMPS_NS5Force4initEv+0x41) [0x725751]
[umt206:05081] [ 7] ./lmp_mkl_jul(_ZN9LAMMPS_NS6LAMMPS4initEv+0x17) [0x7560c7]
[umt206:05081] [ 8] ./lmp_mkl_jul(_ZN9LAMMPS_NS3Run7commandEiPPc+0xccb) [0x9fa2bb]
[umt206:05081] [ 9] ./lmp_mkl_jul(_ZN9LAMMPS_NS5Input15execute_commandEv+0x2ae6) [0x7431a6]
[umt206:05081] [10] ./lmp_mkl_jul(_ZN9LAMMPS_NS5Input4fileEv+0x20f) [0x73ffbf]
[umt206:05081] [11] ./lmp_mkl_jul(main+0xad) [0x75aedd]
[umt206:05081] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x7fd05c730cdd]
[umt206:05081] [13] ./lmp_mkl_jul() [0x4a3969]
[umt206:05081] *** End of error message ***
/tmp/slurmd/job87747/slurm_script: line 7: 5081 Segmentation fault ./lmp_mkl_jul < in.magn
First, I thought that I compiled LAMMPS poorly or there are some bugs on supercomputer, but the same error occurs on the other multiprocessor computer. Additionally, the older version works properly. How can it be resolved?
Thank you,
Oksana.