LAMMPS crashing?

Joshua_Alexander · October 2, 2012, 5:35pm

When trying to run LAMMPS, I get this:

LAMMPS (19 Sep 2012)
Scanning data file ...
  2 = max bonds/atom
  1 = max angles/atom
Reading data file ...
  orthogonal box = (0 0 0) to (88.46 88.28 46.52)
  4 by 2 by 2 MPI processor grid
  26880 atoms
  13440 bonds

lmp_boomer_intel_openmpi_fftw2_nocuda:29007 terminated with signal 11 at
PC=560066 SP=7fff04e06770. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29008 terminated with signal 11 at
PC=560066 SP=7fff2e92a470. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29009 terminated with signal 11 at
PC=560066 SP=7fff0ab8e4f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29010 terminated with signal 11 at
PC=560066 SP=7fff796e33f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29011 terminated with signal 11 at
PC=560066 SP=7fffe03a31f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29012 terminated with signal 11 at
PC=560066 SP=7fffb2c646f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29013 terminated with signal 11 at
PC=560066 SP=7fff044776f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29014 terminated with signal 11 at
PC=560066 SP=7fffa1098e70. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29015 terminated with signal 11 at
PC=560066 SP=7ffff6adc970. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29016 terminated with signal 11 at
PC=560066 SP=7fff92ded170. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29017 terminated with signal 11 at
PC=560066 SP=7fff9e5bf8f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29018 terminated with signal 11 at
PC=560066 SP=7ffff1a87270. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29019 terminated with signal 11 at
PC=560066 SP=7fff85ef8b70. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29020 terminated with signal 11 at
PC=560066 SP=7fff72338570. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29021 terminated with signal 11 at
PC=560066 SP=7ffff73976f0. Backtrace:

lmp_boomer_intel_openmpi_fftw2_nocuda:29022 terminated with signal 11 at
PC=560066 SP=7ffffe361670. Backtrace:
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS4Atom11data_anglesEiPc+0xd6)[0x560066]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS8ReadData7commandEiPPc+0xefb)[0xc67c4b]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input15execute_commandEv+0x134e)[0x847a2e]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(_ZN9LAMMPS_NS5Input4fileEv+0x2f3)[0x845393]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b37699a3cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2af67b840cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ae114d25cdd]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b9f95d87cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b8663503cdd]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b5e35f13cdd]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b2a96d5dcdd]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ad4144d3cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b5f0869bcdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ac16bb06cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b57ffffacdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ba3f91e3cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2ad9884b0cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b72bc10acdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b399ea68cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda(main+0x96)[0x85d876]
/lib64/libc.so.6(__libc_start_main+0xfd)[0x2b7501895cdd]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]
/home/jalexand/lammps/source/lammps-19Sep12/src/lmp_boomer_intel_openmpi_fftw2_nocuda[0x52e099]

sjplimp · October 3, 2012, 2:33pm

Is this a problem in the LAMMPS source code or in the input file?

who can tell with this limited info?
It appears to be something with FFTs. Can you run
without using PPPM?

Steve