Here is my input script:
log log.Zr3.3
units metal
boundary p p p
atom_style atomic
lattice hcp 3.220299
region mybox block 0 30 0 30 0 30
create_box 1 mybox
create_atoms 1 box
pair_style eam/fs
pair_coeff * * Zr_mm.eam.fs Zr
neigh_modify every 1 delay 0 check no
timestep 0.0001
#one atom is designated to be the PKA, and given velocity of 3keV (in lattice spacings/picosecond) in <1 3 5>
group PKA id 31180
velocity PKA set 60.281 180.843 301.405 #3 kev
fix 1 all nve
#fix 1 all nph xyz 2197.9085 2197.9085 10000
thermo_modify lost warn flush yes
thermo 1
#dump single PKA atom 1 dump.single
dump everything all atom 200 dump.Zr3.3.*
#write_restart restart.135.2.50000.0001
restart 1000 restart.Zr3.3.*
run 10000
Nothing too crazy... I get "ERROR: Illegal lattice command" when I try to run it.