Berk,
I am not sure why you would want to perform an NPT simulation with a
vacuum termination. If you want to use NVT, then I recommend using
"kspace_modify slab" option. This creates a vacuum region but still
allows you to use 3D periodic boundary conditions for the long-range
interactions. Here is the documentation:
http://lammps.sandia.gov/doc/kspace_modify.html
Regards,
Jeff Greathouse