So I’m still getting errors in lammps, I recompiled lammps using the 29Jul11 release, and whenever I try running it with the following dump image commands:
dump 3 all image 50000 images/top*.ppm type type adiam 0.5 bond type 0.1 view 0 135
dump 4 all image 100000 images/side*.ppm type type adiam 0.5 bond type 0.1 view 90 135
i get the following error: (I compiled w/ almost the default settings, didn’t include kspace, but that’s all)
mithila:Documents nrokkam$ mpirun -np 6 lmp_mac_mpi<in.smallTest>/dev/null
[mithila:84762] *** Process received signal ***
[mithila:84762] Signal: Segmentation fault (11)
[mithila:84762] Signal code: Address not mapped (1)
[mithila:84762] Failing at address: 0x0
[mithila:84762] [ 0] 2 libSystem.B.dylib 0x00007fff80f1a1ba _sigtramp + 26
[mithila:84762] [ 1] 3 libSystem.B.dylib 0x00007fff80f02e34 _sread + 19
[mithila:84762] [ 2] 4 lmp_mac_mpi 0x00000001000437c5 _ZN9LAMMPS_NS4Comm17forward_comm_dumpEPNS_4DumpE + 373
[mithila:84762] [ 3] 5 lmp_mac_mpi 0x000000010009088c _ZN9LAMMPS_NS9DumpImage12create_imageEv + 1184
[mithila:84762] [ 4] 6 lmp_mac_mpi 0x0000000100092015 _ZN9LAMMPS_NS9DumpImage5writeEv + 209
[mithila:84762] [ 5] 7 lmp_mac_mpi 0x00000001001441e9 _ZN9LAMMPS_NS6Output5setupEi + 287
[mithila:84762] [ 6] 8 lmp_mac_mpi 0x00000001001de346 _ZN9LAMMPS_NS6Verlet5setupEv + 696
[mithila:84762] [ 7] 9 lmp_mac_mpi 0x00000001001c0c3a _ZN9LAMMPS_NS3Run7commandEiPPc + 1768
[mithila:84762] [ 8] 10 lmp_mac_mpi 0x0000000100111198 _ZN9LAMMPS_NS5Input15execute_commandEv + 3598
[mithila:84762] [ 9] 11 lmp_mac_mpi 0x0000000100111c0e _ZN9LAMMPS_NS5Input4fileEv + 806
[mithila:84762] [10] 12 lmp_mac_mpi 0x0000000100118404 main + 97
[mithila:84762] [11] 13 lmp_mac_mpi 0x0000000100006a30 start + 52
[mithila:84762] [12] 14 ??? 0x0000000000000001 0x0 + 1
[mithila:84762] *** End of error message ***
mpirun noticed that job rank 0 with PID 84757 on node mithila.matscieng.sunysb.edu exited on signal 15 (Terminated).