Hi everybody,
Can you please let me know how I can output (XYZ file) the first to the third shell around a special atom?
Thanks.
Hi everybody,
Can you please let me know how I can output (XYZ file) the first to the third shell around a special atom?
Thanks.
This is most easily done in post-processing.
A very, very long time ago (almost 20 years!), I did some demos for selecting water molecules around a central ion with VMD. You can find an archived copy here: Visualization and Analysis of Quantum Chemical and Molecular Dynamics Data with VMD
Thanks a lot!