Rotate 1 molecule relative to another's bond vector

LAMMPS LAMMPS General Discussion
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1

Dear all,

I am hoping to rotate one molecule with respect to another’s bond vector.

I am creating 2 molecules using “create_atoms single x y x mol molecule rotate angle vx vy vx”. I want the second molecule to be rotated with respect to a bond vector of the first molecule. Any advice or comments is appreciated. Thank you.

2

So what have you tried so far and how was it not what you are looking for?

Your description is very vague, so the main advice to be given is to just follow the documentation?

Generally, in order to provide meaningful help, you need to ask specific questions.