the formation of chemiacl bonds in the ovito

Dear All,

I would like to create 4H-SiC structure.

Why the shown chemical bonds are wrong in the ovito?

Do I miss anything?

My code is as follows

units metal

dimension 3

boundary p p p

atom_style atomic

neighbor 1.0 bin

neigh_modify delay 5 check yes

lattice custom 1.8 &

a1 0.5 -0.86602540 0.0 &

a2 0.5 0.86602540 0.0 &

a3 0.0 0.0 1.204 &

basis 0.0 0.0 0.0 &

basis 0.66666667 0.33333333 0.85510588

region box block 0 3.0 0 3.0 0 3.0

create_box 2 box

create_atoms 2 box basis 1 1 basis 2 2

mass 1 12.011 #type 1 = Si

mass 2 28.085 #type 2 = C

velocity all create 300.0 43454 dist gaussian mom yes

fix 1 all nvt temp 300.0 300.0 0.005

/// FORCE FIELD START ///

pair_style tersoff

pair_coeff * * SiCC.txt Si C

/// FORCE FIELD END ///

neighbor 0.3 bin

neigh_modify every 5 delay 0 check yes

thermo 200

timestep 0.001

thermo_style custom step time pe ke press temp

compute 3 all pe/atom

compute 4 all ke/atom

#compute 5 all coord/atom 1.0

dump 1 all atom 1 dump.melt #id xs ys zs c_3 c_4

variable tstep equal “time”

variable TT equal “temp”

variable Pe equal “pe/atoms”

variable Ke equal “ke/atoms”

variable Co equal “coord/atoms”

variable pervolume equal “vol/atoms”

variable tstep equal “time”

run 1

Thank you very much.

Best Regards,

Ryan

林忠豪 Ryan Lin

機械資深工程師 Mechanical Senior Engineer

董事長暨總經理室 Chairman & President Office (CPO)

漢民科技股份有限公司 Hermes-Epitek Corp.

30077 新竹市研新一路18號

No. 18, Creation Rd. 1, Hsinchu city, R.O.C.

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SiCC.txt (1.72 KB)