Dear LAMMPS Users and Developers,
I am using the Targeted Molecular Dynamics (TMD) tool in LAMMPS and I have some questions about the tmd dump file. In this output file there are 8 magnitudes: Step, rho_target, rho_old, gamma_back, gamma_forward, lambda, work_lambda and work_analytical.
I know what step and rho mean but I am a little confused about how the other magnitudes are calculated.
I would appreciate if someone can tell me how are those magnitudes defined.