I just created an empty conda environment, did a clean clone of FireWorks, and python setup.py develop
Here is the full detailed inputs and outputs. Note that the first time I ran your script, it was as-is and producing the errors, the second time is after removing those first two lines.
···
==========
computron-7:~ ajain$ mkdir test_fws
computron-7:~ ajain$ cd test_fws/
computron-7:test_fws ajain$ cp …/test_wf.py .
computron-7:test_fws ajain$ conda create --name fws_test_env python=3.7
Solving environment: done
Package Plan
environment location: /Users/ajain/miniconda3/envs/fws_test_env
added / updated specs:
The following packages will be downloaded:
package | build
---------------------------|-----------------
python-3.7.2 | haf84260_0 21.6 MB
libedit-3.1.20181209 | hb402a30_0 159 KB
ca-certificates-2018.12.5 | 0 123 KB
Total: 21.9 MB
The following NEW packages will be INSTALLED:
ca-certificates: 2018.12.5-0
certifi: 2018.11.29-py37_0
libcxx: 4.0.1-hcfea43d_1
libcxxabi: 4.0.1-hcfea43d_1
libedit: 3.1.20181209-hb402a30_0
libffi: 3.2.1-h475c297_4
ncurses: 6.1-h0a44026_1
openssl: 1.1.1a-h1de35cc_0
pip: 18.1-py37_0
python: 3.7.2-haf84260_0
readline: 7.0-h1de35cc_5
setuptools: 40.6.3-py37_0
sqlite: 3.26.0-ha441bb4_0
tk: 8.6.8-ha441bb4_0
wheel: 0.32.3-py37_0
xz: 5.2.4-h1de35cc_4
zlib: 1.2.11-h1de35cc_3
Proceed ([y]/n)? y
Downloading and Extracting Packages
python-3.7.2 | 21.6 MB | ############################################################################# | 100%
libedit-3.1.20181209 | 159 KB | ############################################################################# | 100%
ca-certificates-2018 | 123 KB | ############################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
To activate this environment, use
$ conda activate fws_test_env
To deactivate an active environment, use
$ conda deactivate
computron-7:test_fws ajain$ conda activate fws_test_env
(fws_test_env) computron-7:test_fws ajain$ git clone [email protected]:materialsproject/fireworks.git
Cloning into ‘fireworks’…
remote: Enumerating objects: 360, done.
remote: Counting objects: 100% (360/360), done.
remote: Compressing objects: 100% (153/153), done.
remote: Total 23630 (delta 277), reused 249 (delta 207), pack-reused 23270
Receiving objects: 100% (23630/23630), 18.02 MiB | 8.16 MiB/s, done.
Resolving deltas: 100% (16863/16863), done.
(fws_test_env) computron-7:test_fws ajain$ cd fireworks/
(fws_test_env) computron-7:fireworks ajain$ python setup.py develop
running develop
running egg_info
creating FireWorks.egg-info
writing FireWorks.egg-info/PKG-INFO
writing dependency_links to FireWorks.egg-info/dependency_links.txt
writing entry points to FireWorks.egg-info/entry_points.txt
writing requirements to FireWorks.egg-info/requires.txt
writing top-level names to FireWorks.egg-info/top_level.txt
writing manifest file ‘FireWorks.egg-info/SOURCES.txt’
reading manifest file ‘FireWorks.egg-info/SOURCES.txt’
reading manifest template ‘MANIFEST.in’
warning: no previously-included files matching ‘*.pyc’ found under directory ‘fireworks’
warning: no previously-included files matching ‘*.pyc’ found under directory ‘docs’
warning: no previously-included files matching ‘*.pyc’ found under directory ‘fw_tutorials’
writing manifest file ‘FireWorks.egg-info/SOURCES.txt’
running build_ext
Creating /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/FireWorks.egg-link (link to .)
Adding FireWorks 1.8.4 to easy-install.pth file
Installing lpad script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installing mlaunch script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installing qlaunch script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installing rlaunch script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installed /Users/ajain/test_fws/fireworks
Processing dependencies for FireWorks==1.8.4
Searching for tqdm>=4.8.4
Reading https://pypi.org/simple/tqdm/
Downloading https://files.pythonhosted.org/packages/ed/d6/3458d39cf4978f4ece846295e83daf5ece710ab0a4106774f7f7b3a68697/tqdm-4.29.1-py2.py3-none-any.whl#sha256=c9b9b5eeba13994a4c266aae7eef7aeeb0ba2973e431027e942b4faea139ef49
Best match: tqdm 4.29.1
Processing tqdm-4.29.1-py2.py3-none-any.whl
Installing tqdm-4.29.1-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding tqdm 4.29.1 to easy-install.pth file
Installing tqdm script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/tqdm-4.29.1-py3.7.egg
Searching for gunicorn>=19.6.0
Reading https://pypi.org/simple/gunicorn/
Downloading https://files.pythonhosted.org/packages/8c/da/b8dd8deb741bff556db53902d4706774c8e1e67265f69528c14c003644e6/gunicorn-19.9.0-py2.py3-none-any.whl#sha256=aa8e0b40b4157b36a5df5e599f45c9c76d6af43845ba3b3b0efe2c70473c2471
Best match: gunicorn 19.9.0
Processing gunicorn-19.9.0-py2.py3-none-any.whl
Installing gunicorn-19.9.0-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/gunicorn-19.9.0-py3.7.egg/EGG-INFO/requires.txt
Adding gunicorn 19.9.0 to easy-install.pth file
Installing gunicorn script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installing gunicorn_paster script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/gunicorn-19.9.0-py3.7.egg
Searching for flask-paginate>=0.4.5
Reading https://pypi.org/simple/flask-paginate/
Downloading https://files.pythonhosted.org/packages/fc/95/d7d61640893050a55365ffba33885883495c0838a05f11984336aa023f00/flask-paginate-0.5.1.tar.gz#sha256=b68e8d7664419ad53728514139811bce9c3f2e56199a6c057ef4c08f9f35f35d
Best match: flask-paginate 0.5.1
Processing flask-paginate-0.5.1.tar.gz
Writing /var/folders/90/ntqv188927lgzsjpt6f_p4_80000gn/T/easy_install-xjc7w6qh/flask-paginate-0.5.1/setup.cfg
Running flask-paginate-0.5.1/setup.py -q bdist_egg --dist-dir /var/folders/90/ntqv188927lgzsjpt6f_p4_80000gn/T/easy_install-xjc7w6qh/flask-paginate-0.5.1/egg-dist-tmp-qd21e8my
creating /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/flask_paginate-0.5.1-py3.7.egg
Extracting flask_paginate-0.5.1-py3.7.egg to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding flask-paginate 0.5.1 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/flask_paginate-0.5.1-py3.7.egg
Searching for flask>=0.11.1
Reading https://pypi.org/simple/flask/
Downloading https://files.pythonhosted.org/packages/7f/e7/08578774ed4536d3242b14dacb4696386634607af824ea997202cd0edb4b/Flask-1.0.2-py2.py3-none-any.whl#sha256=a080b744b7e345ccfcbc77954861cb05b3c63786e93f2b3875e0913d44b43f05
Best match: Flask 1.0.2
Processing Flask-1.0.2-py2.py3-none-any.whl
Installing Flask-1.0.2-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Flask-1.0.2-py3.7.egg/EGG-INFO/requires.txt
Adding Flask 1.0.2 to easy-install.pth file
Installing flask script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Flask-1.0.2-py3.7.egg
Searching for tabulate>=0.7.5
Reading https://pypi.org/simple/tabulate/
Downloading https://files.pythonhosted.org/packages/12/c2/11d6845db5edf1295bc08b2f488cf5937806586afe42936c3f34c097ebdc/tabulate-0.8.2.tar.gz#sha256=e4ca13f26d0a6be2a2915428dc21e732f1e44dad7f76d7030b2ef1ec251cf7f2
Best match: tabulate 0.8.2
Processing tabulate-0.8.2.tar.gz
Writing /var/folders/90/ntqv188927lgzsjpt6f_p4_80000gn/T/easy_install-1wgdm28h/tabulate-0.8.2/setup.cfg
Running tabulate-0.8.2/setup.py -q bdist_egg --dist-dir /var/folders/90/ntqv188927lgzsjpt6f_p4_80000gn/T/easy_install-1wgdm28h/tabulate-0.8.2/egg-dist-tmp-257z8jrx
zip_safe flag not set; analyzing archive contents…
Copying tabulate-0.8.2-py3.7.egg to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding tabulate 0.8.2 to easy-install.pth file
Installing tabulate script to /Users/ajain/miniconda3/envs/fws_test_env/bin
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/tabulate-0.8.2-py3.7.egg
Searching for python-dateutil>=2.5.3
Reading https://pypi.org/simple/python-dateutil/
Downloading https://files.pythonhosted.org/packages/74/68/d87d9b36af36f44254a8d512cbfc48369103a3b9e474be9bdfe536abfc45/python_dateutil-2.7.5-py2.py3-none-any.whl#sha256=063df5763652e21de43de7d9e00ccf239f953a832941e37be541614732cdfc93
Best match: python-dateutil 2.7.5
Processing python_dateutil-2.7.5-py2.py3-none-any.whl
Installing python_dateutil-2.7.5-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/python_dateutil-2.7.5-py3.7.egg/EGG-INFO/requires.txt
Adding python-dateutil 2.7.5 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/python_dateutil-2.7.5-py3.7.egg
Searching for monty>=1.0.1
Reading https://pypi.org/simple/monty/
Downloading https://files.pythonhosted.org/packages/37/32/1766195d89398fa070a5098e462907f31154881d6381746c25b69f1c2fdc/monty-1.0.5-py3-none-any.whl#sha256=e860c905c5e6e3e5c0957e3e0faa983da20c4854c88cd515bb5a4600cd198fa8
Best match: monty 1.0.5
Processing monty-1.0.5-py3-none-any.whl
Installing monty-1.0.5-py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/monty-1.0.5-py3.7.egg/EGG-INFO/requires.txt
Adding monty 1.0.5 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/monty-1.0.5-py3.7.egg
Searching for six>=1.10.0
Reading https://pypi.org/simple/six/
Downloading https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl#sha256=3350809f0555b11f552448330d0b52d5f24c91a322ea4a15ef22629740f3761c
Best match: six 1.12.0
Processing six-1.12.0-py2.py3-none-any.whl
Installing six-1.12.0-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding six 1.12.0 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/six-1.12.0-py3.7.egg
Searching for Jinja2>=2.8.0
Reading https://pypi.org/simple/Jinja2/
Downloading https://files.pythonhosted.org/packages/7f/ff/ae64bacdfc95f27a016a7bed8e8686763ba4d277a78ca76f32659220a731/Jinja2-2.10-py2.py3-none-any.whl#sha256=74c935a1b8bb9a3947c50a54766a969d4846290e1e788ea44c1392163723c3bd
Best match: Jinja2 2.10
Processing Jinja2-2.10-py2.py3-none-any.whl
Installing Jinja2-2.10-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Jinja2-2.10-py3.7.egg/EGG-INFO/requires.txt
Adding Jinja2 2.10 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Jinja2-2.10-py3.7.egg
Searching for pymongo>=3.3.0
Reading https://pypi.org/simple/pymongo/
Downloading https://files.pythonhosted.org/packages/d7/ac/d2e324c1f9bcf653fa106785371a16b4709506a35b04948655de8b961a85/pymongo-3.7.2-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=1826527a0b032f6e20e7ac7f72d7c26dd476a5e5aa82c04aa1c7088a59fded7d
Best match: pymongo 3.7.2
Processing pymongo-3.7.2-cp37-cp37m-macosx_10_9_x86_64.whl
Installing pymongo-3.7.2-cp37-cp37m-macosx_10_9_x86_64.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/pymongo-3.7.2-py3.7-macosx-10.7-x86_64.egg/EGG-INFO/requires.txt
Adding pymongo 3.7.2 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/pymongo-3.7.2-py3.7-macosx-10.7-x86_64.egg
Searching for ruamel.yaml>=0.15.35
Reading https://pypi.org/simple/ruamel.yaml/
Downloading https://files.pythonhosted.org/packages/43/6e/aa168badc6dc6c2894b5dfec3352d1beed3ecf1f41fab3e1c7fd36b883ca/ruamel.yaml-0.15.87-cp37-cp37m-macosx_10_9_x86_64.whl#sha256=5dd0ea7c5c703e8675f3caf2898a50b4dadaa52838f8e104637a452a05e03030
Best match: ruamel.yaml 0.15.87
Processing ruamel.yaml-0.15.87-cp37-cp37m-macosx_10_9_x86_64.whl
Installing ruamel.yaml-0.15.87-cp37-cp37m-macosx_10_9_x86_64.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/ruamel.yaml-0.15.87-py3.7-macosx-10.7-x86_64.egg/EGG-INFO/requires.txt
Adding ruamel.yaml 0.15.87 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/ruamel.yaml-0.15.87-py3.7-macosx-10.7-x86_64.egg
Searching for itsdangerous>=0.24
Reading https://pypi.org/simple/itsdangerous/
Downloading https://files.pythonhosted.org/packages/76/ae/44b03b253d6fade317f32c24d100b3b35c2239807046a4c953c7b89fa49e/itsdangerous-1.1.0-py2.py3-none-any.whl#sha256=b12271b2047cb23eeb98c8b5622e2e5c5e9abd9784a153e9d8ef9cb4dd09d749
Best match: itsdangerous 1.1.0
Processing itsdangerous-1.1.0-py2.py3-none-any.whl
Installing itsdangerous-1.1.0-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding itsdangerous 1.1.0 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/itsdangerous-1.1.0-py3.7.egg
Searching for click>=5.1
Reading https://pypi.org/simple/click/
Downloading https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl#sha256=2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13
Best match: Click 7.0
Processing Click-7.0-py2.py3-none-any.whl
Installing Click-7.0-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding Click 7.0 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Click-7.0-py3.7.egg
Searching for Werkzeug>=0.14
Reading https://pypi.org/simple/Werkzeug/
Downloading https://files.pythonhosted.org/packages/20/c4/12e3e56473e52375aa29c4764e70d1b8f3efa6682bef8d0aae04fe335243/Werkzeug-0.14.1-py2.py3-none-any.whl#sha256=d5da73735293558eb1651ee2fddc4d0dedcfa06538b8813a2e20011583c9e49b
Best match: Werkzeug 0.14.1
Processing Werkzeug-0.14.1-py2.py3-none-any.whl
Installing Werkzeug-0.14.1-py2.py3-none-any.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
writing requirements to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Werkzeug-0.14.1-py3.7.egg/EGG-INFO/requires.txt
Adding Werkzeug 0.14.1 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/Werkzeug-0.14.1-py3.7.egg
Searching for MarkupSafe>=0.23
Reading https://pypi.org/simple/MarkupSafe/
Downloading https://files.pythonhosted.org/packages/96/52/eef455862764cb6d6c136aa52c7f9fc4e7c1c644790a7107b1244a2b8a53/MarkupSafe-1.1.0-cp37-cp37m-macosx_10_6_intel.whl#sha256=1f19ef5d3908110e1e891deefb5586aae1b49a7440db952454b4e281b41620cd
Best match: MarkupSafe 1.1.0
Processing MarkupSafe-1.1.0-cp37-cp37m-macosx_10_6_intel.whl
Installing MarkupSafe-1.1.0-cp37-cp37m-macosx_10_6_intel.whl to /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages
Adding MarkupSafe 1.1.0 to easy-install.pth file
Installed /Users/ajain/miniconda3/envs/fws_test_env/lib/python3.7/site-packages/MarkupSafe-1.1.0-py3.7-macosx-10.7-x86_64.egg
Finished processing dependencies for FireWorks==1.8.4
(fws_test_env) computron-7:fireworks ajain$ cd …
(fws_test_env) computron-7:test_fws ajain$ python test_wf.py
2019-01-24 00:37:32,313 INFO Performing db tune-up
2019-01-24 00:37:32,320 INFO LaunchPad was RESET.
2019-01-24 00:37:32,322 INFO Added a workflow. id_map: {-3: 1, -2: 2, -1: 3}
2019-01-24 00:37:32,501 INFO Created new dir /Users/ajain/test_fws/launcher_2019-01-24-08-37-32-501749
2019-01-24 00:37:32,502 INFO Launching Rocket
2019-01-24 00:37:32,732 INFO RUNNING fw_id: 3 in directory: /Users/ajain/test_fws/launcher_2019-01-24-08-37-32-501749
2019-01-24 00:37:32,740 INFO Task started: ScriptTask.
hello
2019-01-24 00:37:32,748 INFO Task completed: ScriptTask
Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “fireworks/fireworks/core/rocket.py”, line 357, in run
lp.complete_launch(launch_id, m_action, final_state)
File “fireworks/fireworks/core/launchpad.py”, line 1278, in complete_launch
self._refresh_wf(fw_id)
File “fireworks/fireworks/core/launchpad.py”, line 1482, in _refresh_wf
raise RuntimeError(err_message)
RuntimeError: Error refreshing workflow. The full stack trace is: Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “fireworks/fireworks/core/rocket.py”, line 357, in run
File “fireworks/fireworks/core/launchpad.py”, line 1278, in complete_launch
File “fireworks/fireworks/core/launchpad.py”, line 1482, in _refresh_wf
RuntimeError: Error refreshing workflow. The full stack trace is: Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1468, in _refresh_wf
File “fireworks/fireworks/core/launchpad.py”, line 1508, in _update_wf
File “fireworks/fireworks/core/firework.py”, line 1080, in to_db_dict
File “fireworks/fireworks/core/firework.py”, line 779, in state
File “fireworks/fireworks/core/firework.py”, line 779, in
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “test_wf.py”, line 18, in
rapidfire(launchpad)
File “fireworks/fireworks/core/rocket_launcher.py”, line 108, in rapidfire
File “fireworks/fireworks/core/rocket_launcher.py”, line 58, in launch_rocket
File “fireworks/fireworks/core/rocket.py”, line 402, in run
File “fireworks/fireworks/core/launchpad.py”, line 1278, in complete_launch
File “fireworks/fireworks/core/launchpad.py”, line 1482, in _refresh_wf
RuntimeError: Error refreshing workflow. The full stack trace is: Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “fireworks/fireworks/core/rocket.py”, line 357, in run
lp.complete_launch(launch_id, m_action, final_state)
File “fireworks/fireworks/core/launchpad.py”, line 1278, in complete_launch
self._refresh_wf(fw_id)
File “fireworks/fireworks/core/launchpad.py”, line 1482, in _refresh_wf
raise RuntimeError(err_message)
RuntimeError: Error refreshing workflow. The full stack trace is: Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1468, in _refresh_wf
self._update_wf(wf, updated_ids)
File “fireworks/fireworks/core/launchpad.py”, line 1508, in _update_wf
wf = wf.to_db_dict()
File “fireworks/fireworks/core/firework.py”, line 1080, in to_db_dict
m_dict[‘state’] = self.state
File “fireworks/fireworks/core/firework.py”, line 779, in state
for child_id in self.links[fizzled_id])):
File “fireworks/fireworks/core/firework.py”, line 779, in
for child_id in self.links[fizzled_id])):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
(fws_test_env) computron-7:test_fws ajain$ vi test_wf.py # remove the first two lines of the script
(fws_test_env) computron-7:test_fws ajain$ python test_wf.py
2019-01-24 00:39:41,917 INFO Performing db tune-up
2019-01-24 00:39:41,923 INFO LaunchPad was RESET.
2019-01-24 00:39:41,925 INFO Added a workflow. id_map: {-3: 1, -2: 2, -1: 3}
2019-01-24 00:39:42,007 INFO Created new dir /Users/ajain/test_fws/launcher_2019-01-24-08-39-42-006876
2019-01-24 00:39:42,007 INFO Launching Rocket
2019-01-24 00:39:42,019 INFO RUNNING fw_id: 3 in directory: /Users/ajain/test_fws/launcher_2019-01-24-08-39-42-006876
2019-01-24 00:39:42,024 INFO Task started: ScriptTask.
hello
2019-01-24 00:39:42,028 INFO Task completed: ScriptTask
2019-01-24 00:39:42,049 INFO Rocket finished
2019-01-24 00:39:42,052 INFO Created new dir /Users/ajain/test_fws/launcher_2019-01-24-08-39-42-052138
2019-01-24 00:39:42,052 INFO Launching Rocket
2019-01-24 00:39:42,061 INFO RUNNING fw_id: 1 in directory: /Users/ajain/test_fws/launcher_2019-01-24-08-39-42-052138
2019-01-24 00:39:42,066 INFO Task started: PyTask.
2019-01-24 00:39:47,068 INFO Task completed: PyTask
2019-01-24 00:39:47,080 INFO Rocket finished
2019-01-24 00:39:47,083 INFO Created new dir /Users/ajain/test_fws/launcher_2019-01-24-08-39-47-082953
2019-01-24 00:39:47,083 INFO Launching Rocket
2019-01-24 00:39:47,092 INFO RUNNING fw_id: 2 in directory: /Users/ajain/test_fws/launcher_2019-01-24-08-39-47-082953
2019-01-24 00:39:47,096 INFO Task started: ScriptTask.
goodbye
2019-01-24 00:39:47,100 INFO Task completed: ScriptTask
2019-01-24 00:39:47,111 INFO Rocket finished
============
On Thu, Jan 24, 2019 at 12:23 AM Leip [email protected] wrote:
I used python setup.py develop
The test seems ok (ran 156 tests, OK (skipped=8)
Le mercredi 23 janvier 2019 10:57:22 UTC+1, Leip a écrit :
Hi,
I’d like to use PyTask to execute custom functions.
Using the very simple Workflow from the doc, I have this:
~/working$ ls
fireworks test-wf.py
~/working$ cat test-wf.py
import sys
sys.path.insert(0, “fireworks”)
from fireworks import Firework, Workflow, LaunchPad, ScriptTask, PyTask
from fireworks.core.rocket_launcher import rapidfire
set up the LaunchPad and reset it
launchpad = LaunchPad()
launchpad.reset(‘’, require_password=False)
create the individual FireWorks and Workflow
fw1 = Firework(ScriptTask.from_str(‘echo hello’), name=“hello”)
fw2 = Firework(ScriptTask.from_str(‘echo goodbye’), name=“goodbye”)
fw_timer = Firework(PyTask(func=‘time.sleep’,args=[5]))
wf = Workflow([fw1, fw2, fw_timer], {fw1:fw_timer, fw_timer: fw2}, name=“test workflow”)
store workflow and launch it locally
launchpad.add_wf(wf)
rapidfire(launchpad)
~/working$ python3 test-wf.py
2019-01-23 10:53:15,208 INFO Performing db tune-up
2019-01-23 10:53:15,215 INFO LaunchPad was RESET.
2019-01-23 10:53:15,218 INFO Added a workflow. id_map: {-3: 1, -2: 2, -1: 3}
2019-01-23 10:53:15,287 INFO Created new dir /home/leid/working/launcher_2019-01-23-09-53-15-287161
2019-01-23 10:53:15,287 INFO Launching Rocket
2019-01-23 10:53:15,299 INFO RUNNING fw_id: 3 in directory: /home/leid/working/launcher_2019-01-23-09-53-15-287161
2019-01-23 10:53:15,308 INFO Task started: ScriptTask.
hello
2019-01-23 10:53:15,314 INFO Task completed: ScriptTask
Traceback (most recent call last):
File “fireworks/fireworks/core/launchpad.py”, line 1467, in _refresh_wf
updated_ids = wf.refresh(fw_id)
File “fireworks/fireworks/core/firework.py”, line 1011, in refresh
updated_ids = updated_ids.union(self.refresh(child_id, updated_ids))
File “fireworks/fireworks/core/firework.py”, line 974, in refresh
if fw.spec.get(‘_allow_fizzled_parents’):
File “fireworks/fireworks/core/launchpad.py”, line 1790, in spec
return self.partial_fw.spec
File “fireworks/fireworks/core/launchpad.py”, line 1863, in partial_fw
self._fw = Firework.from_dict(data)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in _decorator
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 155, in
new_args[0] = {k: _recursive_load(v) for k, v in args[0].items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in _recursive_load
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 118, in
return {k: _recursive_load(v) for k, v in obj.items()}
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in _recursive_load
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 121, in
return [_recursive_load(v) for v in obj]
File “fireworks/fireworks/utilities/fw_serializers.py”, line 113, in _recursive_load
return load_object(obj)
File “fireworks/fireworks/utilities/fw_serializers.py”, line 369, in load_object
raise ValueError(‘load_object() could not find a class with cls._fw_name {}’.format(fw_name))
ValueError: load_object() could not find a class with cls._fw_name PyTask
I also tried others imports:
from fireworks.user_objects.firetasks.script_task import PyTask
or:
import fireworks.user_objects.firetasks.script_task
How should I do?
(And why is the documentation so unclear?)
–
You received this message because you are subscribed to the Google Groups “fireworkflows” group.
To unsubscribe from this group and stop receiving emails from it, send an email to [email protected].
To post to this group, send email to [email protected].
Visit this group at https://groups.google.com/group/fireworkflows.
For more options, visit https://groups.google.com/d/optout.
–
Best,
Anubhav