I want to calculate the transport properties of the pristine system. In this regard, I would sincerely request you to let me know whether zero doping calculation can be performed using amset.
Please let me know.
If you have no doping then there will be no free carriers to contribute to transport so, so there will be no transport (unless your system is a metal or very small band gap semiconductor where thermal excitations can result in free carriers).
Using a doping of ~1e13 should give you the intrinsic transport properties. You can also turn off IMP scattering to remove the effects of impurity scattering.
There will never be a completely pristine system. Thermodynamics dictates that there will always be some defects present.
The doping tag sets the number of free carriers. It doesn’t matter whether these come from defects or thermally excited carriers. You set a carrier concentration and the Fermi level position that produces this carrier concentration (e.g., doping and temperature dependent) is solved.
The doping tag also indirectly controls the number of ionised impurities for IMP scattering. See this equation here: Scattering Rates - AMSET Documentation
This is only a rough model for impurity scattering assuming some defect compensation but it is hard to do much better without actually calculating the defect concentrations from first-principles defects calculations.